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The map label for this gene is pagD

Identifier: 16764599

GI number: 16764599

Start: 1331176

End: 1331439

Strand: Reverse

Name: pagD

Synonym: STM1244

Alternate gene names: 16764599

Gene position: 1331439-1331176 (Counterclockwise)

Preceding gene: 16764601

Following gene: 16764598

Centisome position: 27.41

GC content: 41.67

Gene sequence:

>264_bases
ATGAAACATCATGCTTTTATGCTTTGGTCATTACTTATTTTTTCATTCCATGTTTTGGCCAGTTCAGGCCATTGTTCTGG
TTTACAACAGGCATCATGGGATATTTTTATCTACGATTTTGGTAGTAAAACCCCGCAACCACCTACAAATACTGATAAAA
AGCAAGCCAGGCAGATTAGTTCACCGTCCTGCCCGACGACAAAACCCATGATGTCCGCACCAGTCAATGACGCCAGGAAA
GGGAATACTTTCTCCAGAACATAA

Upstream 100 bases:

>100_bases
TATTAAGAGTGGTTAACTCTTCGTTGAATAAAAAATGTCAATGACGTTCCATAATTCAGGAGATGAACTTCACAAGTCAT
TATATATAACAGGAGGTGCT

Downstream 100 bases:

>100_bases
TGTTATTTATCTACAATGGTGCCGAACGACTACTTTTAGCCACCCGGAAATCTTGATTGCCATCAAATATAGCTGGCATT
ATTTTTCCTGACGTGTATAG

Product: virulence protein PAGD precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 87; Mature: 87

Protein sequence:

>87_residues
MKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTTKPMMSAPVNDARK
GNTFSRT

Sequences:

>Translated_87_residues
MKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTTKPMMSAPVNDARK
GNTFSRT
>Mature_87_residues
MKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTTKPMMSAPVNDARK
GNTFSRT

Specific function: Putative function in virulence. Could be involved in promoting S.typhimurium survival within macrophages

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PAGD_SALTY (Q56029)

Other databases:

- EMBL:   U31849
- EMBL:   AE006468
- RefSeq:   NP_460214.1
- GeneID:   1252762
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1244
- NMPDR:   fig|99287.1.peg.1205
- HOGENOM:   HBG671333
- OMA:   ANTDKKQ
- ProtClustDB:   CLSK894201
- BioCyc:   STYP99287:STM1244-MONOMER
- GO:   GO:0009405

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9701; Mature: 9701

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKTPQPPTNTDKKQARQIS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCC
SPSCPTTKPMMSAPVNDARKGNTFSRT
CCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKTPQPPTNTDKKQARQIS
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHCC
SPSCPTTKPMMSAPVNDARKGNTFSRT
CCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7665482; 11677609