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The map label for this gene is ycfM [H]

Identifier: 16764562

GI number: 16764562

Start: 1291153

End: 1291791

Strand: Direct

Name: ycfM [H]

Synonym: STM1207

Alternate gene names: 16764562

Gene position: 1291153-1291791 (Clockwise)

Preceding gene: 16764561

Following gene: 16764563

Centisome position: 26.58

GC content: 54.15

Gene sequence:

>639_bases
ATGACAAAAATGCATCGCTACGCTGCCATTGCTGCGCTGGCGATATTTCTCTCCGGGTGTATGGCGCAACGTCAACCTGC
GCCAGTTGAAGAGGTAAAACCAGCGCCAGAACAACCCGCGCAGCCGCCGCAGCCTCCTGTTGTGCCGTCTGTGCCAACGA
TTCCACAGCAACCGGGGCCGATCGAACATGAAGATCAAACGGGCCAGCCAGCGCCTAAGGTGCGCCACTATGACTGGAAC
GGCGCGATGCAACCGCTGGTCAGCAAAATGTTGCAGGCTGATGGCGTGACGGCCGGAAGCGTATTGCTTGTTGACAGCGT
GAATAACCGGACGAATGGGTCGTTAAATGCGAACGAGGCAACGGAAACGTTACGTAATGCGCTGGCGAACAACGGTAAAT
TTACGCTGGTGTCCGTACAGCAACTCTCGATGGCAAAACAGCAGTTAGGATTGTCTCCGCAGGATAGTCTGGGAACGCGC
AGTAAAGCTATTGGCATTGCGCGCAATGTCGGGGCGCAATATGTACTTTACTCCAGCGCATCCGGTAACGTTAACGCGCC
TGCATTACAGATGCAGTTAATGCTGGTGCAAACTGGCGAGATAATCTGGTCAGGTAAAGGTGCGGTCCAACAACAATAA

Upstream 100 bases:

>100_bases
ACCATACCCGCGCGTTCGTCGGTAACGCTATTTGGCAGCGCCAATTATCTGGGGGCGCATAAGGTCAGGCTTTATCTTTA
TTTGTGAGGAGTGAATTTTG

Downstream 100 bases:

>100_bases
TCCCTTAACGCGCGACGAGATCCTGTCGCGCTATTTTCCCCAGTATCGTCCCGCCGTCGCCACATCGCAGGGGCTAAGCG
GCGGGAGCTGTATTATTGCC

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 212; Mature: 211

Protein sequence:

>212_residues
MTKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQPPVVPSVPTIPQQPGPIEHEDQTGQPAPKVRHYDWN
GAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTR
SKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ

Sequences:

>Translated_212_residues
MTKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQPPVVPSVPTIPQQPGPIEHEDQTGQPAPKVRHYDWN
GAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTR
SKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ
>Mature_211_residues
TKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQPPVVPSVPTIPQQPGPIEHEDQTGQPAPKVRHYDWNG
AMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTRS
KAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ

Specific function: Unknown

COG id: COG3417

COG function: function code R; Collagen-binding surface adhesin SpaP (antigen I/II family)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787348, Length=213, Percent_Identity=89.2018779342723, Blast_Score=383, Evalue=1e-108,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014094 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22524; Mature: 22393

Theoretical pI: Translated: 9.06; Mature: 9.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQPPVVPSVPTIPQQPGP
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
IEHEDQTGQPAPKVRHYDWNGAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEA
CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHH
TETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAQYVLYSSA
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCEEEEEECC
SGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ
CCCCCCCHHHEEEEEEECCCEEECCCCCCCCC
>Mature Secondary Structure 
TKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQPPVVPSVPTIPQQPGP
CCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
IEHEDQTGQPAPKVRHYDWNGAMQPLVSKMLQADGVTAGSVLLVDSVNNRTNGSLNANEA
CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCHHH
TETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAQYVLYSSA
HHHHHHHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHCCCCEEEEEECC
SGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ
CCCCCCCHHHEEEEEEECCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]