| Definition | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 chromosome, complete genome. |
|---|---|
| Accession | NC_003197 |
| Length | 4,857,432 |
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The map label for this gene is yccS [H]
Identifier: 16764432
GI number: 16764432
Start: 1163692
End: 1165845
Strand: Reverse
Name: yccS [H]
Synonym: STM1073
Alternate gene names: 16764432
Gene position: 1165845-1163692 (Counterclockwise)
Preceding gene: 16764433
Following gene: 16764430
Centisome position: 24.0
GC content: 54.32
Gene sequence:
>2154_bases ATGTTAAGTCCGTTGATTCGCCGTTATACCTGGAACAGTACCTGGCTGTATTACATCCGCATTTTTATCGCTCTGTGCGG CACCACCGCCCTGCCCTGGTGGCTGGGCGACGTCAAACTTACCATCCCGCTCACGCTCGGTATGGTTGCCGCGGCGCTAA CCGATCTCGACGATCGCCTTGCCGGACGCTTGCGTAATTTAATCATTACCTTAATTTGCTTTTTTATCGCGTCGGCTTCT GTGGAGCTGCTCTTTCCCTGGCCGTGGCTATTTGCGTTGGGCTTAACGTTATCCACCAGCGGGTTTATTCTGTTGGGAGG ACTGGGGCAACGCTATGCCACCATCGCGTTCGGCGCGTTACTCATTGCCATCTATACGATGCTGGGTACCTCTTTATACG ATCACTGGTATCAGCAACCACTGCTCCTGCTGGCAGGCGCAGTATGGTATAACCTACTGACGCTAACCGGGCATCTGCTA TTTCCGATCCGTCCGTTGCAGGATAATCTGGCACGCAGTTACGAACAGTTAGCGCACTATCTGGAACTGAAATCACGTCT GTTTGATCCTGATATTGAAGATGAAAGCCAGGCGCCGCTCTATGATTTAGCGTTAGCGAACGGGCAGTTAATGGCGACGC TGAACCAAACGAAAGTGTCGTTGTTGACTCGCCTGCGCGGCGATCGCGGTCAACGCGGTACGCGCCGCACCCTCCATTAC TATTTTGTGGCGCAGGATATTCATGAACGCGCCAGTTCTTCGCATATTCAATACCAGACGCTGCGCGATTATTTTCGCCA TAGCGACGTCATGTTCCGCTTTCAGCGTCTGATGTCGATGCAGGCGCAGGCCTGTACGCAGCTGGCGCGCTGTATCTTAC TGCGTACGCCGTACCAGCATGATCCGCGCTTTGAACGCGTCTTTACCCACATTGACGCCGCGCTTGAACGTATGCGCGCC AGCGGCGCTTCTTTAGAGCTGCTGAATACGCTTGGATTCTTATTAACCAACCTACGCGCTATTGATGCGCAACTAGCGAC GATCGAGTCGGAGCAGGCCCAGGCAATGCCGCGCAATGAGTCAGAAAACCAGTTGGCTGATGATAGCCTGCACGGGTTTA GCGACATCTGGCTGCGTCTGAGCCGTAATTTTACCCCGGAGTCCGCTCTCTTTCGCCATGCGGTACGCATGTCGCTGGTA TTGTGCATCGGTTATGCTCTCATCCAAATTACCGGGATGCGCCACGGGTACTGGATATTGCTCACCAGCCTGTTCGTTTG CCAGCCTAACTATAACGCGACCCGCCATCGCCTTGCGCTCAGGATTATCGGCACGTTGGTAGGCGTTGCTATCGGCCTGC CGATTTTATGGTTTGTTCCTTCGCTTGAAGGACAGTTAGTTCTGCTGGTGATTACCGGCGTGCTTTTCTTCGCATTCCGT AATGTGCAGTATGCCCATGCGACGATGTTCATCACCCTGCTGGTATTACTCTGCTTTAACCTCCTGGGCGAAGGCTTCGA GGTAGCGTTACCGCGCGTCGTCGACACGTTAATTGGCTGCGCTATCGCCTGGGCTGCGGTCAGCTTTATTTGGCCGGACT GGCGCTTTCGCAACCTTCCCCGGGTACTCCAGCGCGCCACCGATGCTAATTGCCGCTACCTTGATGCGATCCTTGAGCAA TATCACCAGGGACGGGATAACCGCCTGGCCTATCGCATTGCCAGACGCGACGCGCACAACCGCGATGCAGAACTGGCATC CGTGGTTTCTAATATGTCGAGCGAACCCGACGTCACGGCTGAAACCCGGGAGGCGGCGTTCAGGCTGCTTTGCCTCAATC ACACTTTTACCAGCTATATCTCCGCCCTCGGCGCGCACCGCGAAAAGCTCAGTAATCCGGACGTGTTGGGGCTTCTGGAT GACGCGGTCTGCTACGTTGATGATGCGCTTCATCATCAACCTGAAGACGAACAGCGCGTACACCAGGCGCTGGAGGGTTT AAAGCAGCGAGTTCAGTCACTGGAAACACGTCCGGACAGCAAAGAACCTCTGGTTGTTCAACAAATTGGTTTGCTCATTG CCTTACTGCCCGAGATTGGACGCTTGCAACGGCAAATTTCACCGCCGATTTCTACATTAATTACCCAGCCGTAA
Upstream 100 bases:
>100_bases TTGGCCTGTCGGTCGCCGCGTCGTCTCTGTAGAAACCGCTCGCGCCGCGCGAGAAGCTAACGCGCGCCGCCGTTTTGAAT GATCGGGACAAATAGCCTTT
Downstream 100 bases:
>100_bases GCGAATGAGCCCAGTCGGCAAGCTCCTGGCGACGACTCGCCGGGAGCGCCGCTTCATGTACGCCGACAATTGCGCCTTCC AGGGCATACAAAACTTTCAC
Product: transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 717; Mature: 717
Protein sequence:
>717_residues MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLICFFIASAS VELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYDHWYQQPLLLLAGAVWYNLLTLTGHLL FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRA SGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLV LCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVVDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQ YHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLD DAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPISTLITQP
Sequences:
>Translated_717_residues MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLICFFIASAS VELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYDHWYQQPLLLLAGAVWYNLLTLTGHLL FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRA SGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLV LCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVVDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQ YHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLD DAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPISTLITQP >Mature_717_residues MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRLAGRLRNLIITLICFFIASAS VELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYDHWYQQPLLLLAGAVWYNLLTLTGHLL FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRA SGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLV LCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVVDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQ YHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLD DAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPISTLITQP
Specific function: Unknown
COG id: COG1289
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the yccS/yhfK family [H]
Homologues:
Organism=Escherichia coli, GI87081808, Length=707, Percent_Identity=88.967468175389, Blast_Score=1286, Evalue=0.0, Organism=Escherichia coli, GI87082248, Length=591, Percent_Identity=24.5346869712352, Blast_Score=105, Evalue=1e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010019 - InterPro: IPR010020 [H]
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 81431; Mature: 81431
Theoretical pI: Translated: 7.63; Mature: 7.63
Prosite motif: PS00217 SUGAR_TRANSPORT_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRL CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECCEEEEHHHHHHHHHHHHHHHHHHH AGRLRNLIITLICFFIASASVELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGAL HHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH LIAIYTMLGTSLYDHWYQQPLLLLAGAVWYNLLTLTGHLLFPIRPLQDNLARSYEQLAHY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY HHHHHHHCCCCCCCCCCCCHHHHEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHH YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQH HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DPRFERVFTHIDAALERMRASGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNE CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCC SENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLVLCIGYALIQITGMRHGYWIL CCCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVVDTLIGCAIAWAAVSFIWPDWRFRNLP CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH RVLQRATDANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTA HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCH ETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLDDAVCYVDDALHHQPEDEQRV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHH HQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPISTLITQP HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC >Mature Secondary Structure MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPLTLGMVAAALTDLDDRL CCCHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCEECCEEEEHHHHHHHHHHHHHHHHHHH AGRLRNLIITLICFFIASASVELLFPWPWLFALGLTLSTSGFILLGGLGQRYATIAFGAL HHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH LIAIYTMLGTSLYDHWYQQPLLLLAGAVWYNLLTLTGHLLFPIRPLQDNLARSYEQLAHY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH LELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTKVSLLTRLRGDRGQRGTRRTLHY HHHHHHHCCCCCCCCCCCCHHHHEECCCCEEEEHHHHHHHHHHHHCCCCCCCCCHHHHHH YFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQRLMSMQAQACTQLARCILLRTPYQH HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC DPRFERVFTHIDAALERMRASGASLELLNTLGFLLTNLRAIDAQLATIESEQAQAMPRNE CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCCCCC SENQLADDSLHGFSDIWLRLSRNFTPESALFRHAVRMSLVLCIGYALIQITGMRHGYWIL CCCCCCCHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LTSLFVCQPNYNATRHRLALRIIGTLVGVAIGLPILWFVPSLEGQLVLLVITGVLFFAFR HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH NVQYAHATMFITLLVLLCFNLLGEGFEVALPRVVDTLIGCAIAWAAVSFIWPDWRFRNLP CCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCHH RVLQRATDANCRYLDAILEQYHQGRDNRLAYRIARRDAHNRDAELASVVSNMSSEPDVTA HHHHHHCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCH ETREAAFRLLCLNHTFTSYISALGAHREKLSNPDVLGLLDDAVCYVDDALHHQPEDEQRV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHCCCCCHHHHH HQALEGLKQRVQSLETRPDSKEPLVVQQIGLLIALLPEIGRLQRQISPPISTLITQP HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8905232; 9278503 [H]