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The map label for this gene is yccR [H]

Identifier: 16764431

GI number: 16764431

Start: 1163100

End: 1163705

Strand: Direct

Name: yccR [H]

Synonym: STM1072

Alternate gene names: 16764431

Gene position: 1163100-1163705 (Clockwise)

Preceding gene: 16764428

Following gene: 16764434

Centisome position: 23.94

GC content: 50.17

Gene sequence:

>606_bases
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCTCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTGCGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTCCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Upstream 100 bases:

>100_bases
AAAAATCATCTTGCTCGCGGAGTATAAGTTGCCTATTTTCGTCATTAACGGATCCGTTACTGCAAATTATTCTTTTACTT
TATGATTTAAAAGGAATTTT

Downstream 100 bases:

>100_bases
TTAATGTAGAAATCGGCGGTGAAATTTGCCGTTGCAAGCGTCCAATCTCGGGCAGTAAGGCAATGAGCAAACCAATTTGT
TGAACAACCAGAGGTTCTTT

Product: DNA transformation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 201; Mature: 201

Protein sequence:

>201_residues
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Sequences:

>Translated_201_residues
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG
>Mature_201_residues
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Specific function: Unknown

COG id: COG3070

COG function: function code K; Regulator of competence-specific genes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae DNA transformation protein tfoX [H]

Homologues:

Organism=Escherichia coli, GI1787193, Length=199, Percent_Identity=75.8793969849246, Blast_Score=325, Evalue=2e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007077
- InterPro:   IPR007076 [H]

Pfam domain/function: PF04994 TfoX_C; PF04993 TfoX_N [H]

EC number: NA

Molecular weight: Translated: 23175; Mature: 23175

Theoretical pI: Translated: 8.83; Mature: 8.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHEEEEEEECCEEEEEEHHHCCCEE
VKHPPAWLMFMKCGRPVMLNYYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLK
CCCCCHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSNPLLTVKVLYALEGAIVGVHE
HCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCHHEEHHH
AALPASRRQELADWAHSLTAG
HHCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYC
CCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEHHEEEEEEECCEEEEEEHHHCCCEE
VKHPPAWLMFMKCGRPVMLNYYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLK
CCCCCHHHHHHHCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSNPLLTVKVLYALEGAIVGVHE
HCCCCEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHCCHHEEHHH
AALPASRRQELADWAHSLTAG
HHCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]