Click here to switch to the map view.

The map label for this gene is rmf [H]

Identifier: 16764425

GI number: 16764425

Start: 1157641

End: 1157808

Strand: Direct

Name: rmf [H]

Synonym: STM1066

Alternate gene names: 16764425

Gene position: 1157641-1157808 (Clockwise)

Preceding gene: 16764424

Following gene: 16764428

Centisome position: 23.83

GC content: 53.57

Gene sequence:

>168_bases
ATGAAGAGACAAAAACGAGATCGCCTGGAACGGGCACATCAACGTGGATATCAGGCCGGCATCGCCGGACGATCAAAAGA
AATGTGTCCCTATCAGACGCTGAATCAACGGTCATACTGGTTGGGAGGTTGGCGACAAGCCATGGAGGACAGGGCGGTAA
TGGCCTGA

Upstream 100 bases:

>100_bases
TTGACGGGCGATCCATTTAGAGGTATTCGTGTAGTGTGATTGCACATTTTGTAATCACTGTTTTCTTTTCCACCAGATAC
AAATATGAGGGAAACGAGGC

Downstream 100 bases:

>100_bases
TTCTGTCTCTTTAGAAAAAGAAACCTCCGCAGTGCGGAGGTTTCGCCTTTATGGGCTTTGCAAGCATGATACCGATAGCG
CGGAATATCAATTCAACACT

Product: ribosome modulation factor

Products: NA

Alternate protein names: Protein E [H]

Number of amino acids: Translated: 55; Mature: 55

Protein sequence:

>55_residues
MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGWRQAMEDRAVMA

Sequences:

>Translated_55_residues
MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGWRQAMEDRAVMA
>Mature_55_residues
MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGWRQAMEDRAVMA

Specific function: Associates with 70S ribosomes and converts them to a dimeric form (100S ribosomes) which appears during the transition from the exponential growth phase to the stationary phase of E.coli cells [H]

COG id: COG3130

COG function: function code J; Ribosome modulation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1787186, Length=55, Percent_Identity=92.7272727272727, Blast_Score=106, Evalue=2e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007040
- InterPro:   IPR023200
- ProDom:   PD051650 [H]

Pfam domain/function: PF04957 RMF [H]

EC number: NA

Molecular weight: Translated: 6572; Mature: 6572

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
9.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
7.3 %Met     (Mature Protein)
9.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGWRQAMEDRAVMA
CCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGWRQAMEDRAVMA
CCCHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]