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The map label for this gene is intQ [H]

Identifier: 16764365

GI number: 16764365

Start: 1098228

End: 1099520

Strand: Reverse

Name: intQ [H]

Synonym: STM1005

Alternate gene names: 16764365

Gene position: 1099520-1098228 (Counterclockwise)

Preceding gene: 16764366

Following gene: 16764364

Centisome position: 22.64

GC content: 48.8

Gene sequence:

>1293_bases
ATGGCTAATGCATCATACCCGACAGGCGTCGAAAACCACGGCGGTTCGCTCCGCATCTGGTTTCTGTATAAAGGTAAACG
TGTCAGGGAAAACCTTGGTATCCCTGACACTGCAAAAAATCGCAAGATAGCTGGCGAACTGCGTTCTTCGGTTTGTTTTG
CGATAAGGATGGGGAATTTTAACTATGTGGAAAAATTCCCAAACTCACCGAACCTTGCCCGGTTCGGTCAGGATAGAAAG
GAAATTACTGTGCTGGAGCTTACCGAAAGATGGTCCGAGCTGAAGAGAATGGAGATCAGCTCTAATACCATGAGTAGGTA
CGAATCTATCATAAAAAACATGCTTCCACTCATCGGCGAAAACAAAATGGTTTCTGCGGTGACTACTGAGGATTTGCTGT
ATGTCAGGAAGGAGTTGCTGACGGGCTTTCAGGTAATGAAGAAGGATCACCGGACTCAGGTTAAAGGCCGGAAATCGTCC
ACAGTGAATAATTACATGATGCTGATGGCCGAGATCTTCCAGTTTGGAACAGATAACGGCTATGCAAAGGAAAACCCGTT
TAGCGGAATTAACCGTCTCAAGAAAGCGAAAGGGGAACCAGATCCACTCACGACAGACGAGTTCATCAGGTTTATCCAGG
CATGCGGACACCAGCAGATGAGAAATCTCTGGTCACTGGCAGTCTATACCGGAATGAGGCATGGGGAGTTGTGCGGTCTG
GCCTGGGAAGATATCGATCTGCATGCCGGGACGATCATTGTGAAGCGCAACCTTACCCAGACGGATGAGTTCACCCTGCC
AAAAACCGACGCAGGTACTGACAGGGTGATATATCTCATTCAACCAGCTATTGATGCCCTGAGGAATCAGGCCCAGTTGA
CACGCCTTGGCCGGCAGTTTGAGGTTGAAGTGAAGTTGCGGGAATATGGACAATCTGTCATTCAGCCCTGCACGTTCGTA
TTCAGCCCTCAATGCGTCAAACGTGGACCTCGCACAGGATATCACTACGCGGTTAATTCCATTAATAAAATTTGGGCCCC
GATAATCAAGCGTGCCGGCATTCGTTACCGTAACGCGTATCAGTCACGACATACCTATGCATGCTGGTCATTATCAGCTG
GTGCTAACCCAAACTTTATAGCAACGCAGATGGGGCATACCGATGCACAGATGGTTTACAAGGTGTATGGAAAGTGGATG
TCAGAGAAGAGCGCAGAACAGGTTTCTCTGCTCAACCAGGCACTTTTCCGCTATGCCCCATCACTGCCCCAAAGCATGGT
AGCAGCGCAGTAG

Upstream 100 bases:

>100_bases
TTGATCAGTGGATCGAGGCGCAGAAAAAAAATCAACCAGGTGCGAAGACAACATGAAAAGCTGTACACTCGTCAATGCTC
CTGGACGTCAGGAGGGATTA

Downstream 100 bases:

>100_bases
AAATCCTTAAATTCAAGGGGTTAGCAGTCGCATCGCTACATTTTTATAACATGGGGCACGAAATGCGCTCGACCCTAAAG
ACAGCTTATGGTGTGATCGG

Product: integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSPNLARFGQDRK
EITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSS
TVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGL
AWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFV
FSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWM
SEKSAEQVSLLNQALFRYAPSLPQSMVAAQ

Sequences:

>Translated_430_residues
MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSPNLARFGQDRK
EITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSS
TVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGL
AWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFV
FSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWM
SEKSAEQVSLLNQALFRYAPSLPQSMVAAQ
>Mature_429_residues
ANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNFNYVEKFPNSPNLARFGQDRKE
ITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSST
VNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGLA
WEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVF
SPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMS
EKSAEQVSLLNQALFRYAPSLPQSMVAAQ

Specific function: Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome [H]

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1787607, Length=410, Percent_Identity=43.1707317073171, Blast_Score=341, Evalue=6e-95,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR022000
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109 [H]

Pfam domain/function: PF12167 DUF3596; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 49031; Mature: 48900

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNF
CCCCCCCCCCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHCEEEEEEECCC
NYVEKFPNSPNLARFGQDRKEITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGE
HHHHHCCCCCCHHHHCCCCHHEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
NKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNG
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
YAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGL
CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC
AWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQF
EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCE
EVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAY
EEEEHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
QSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALFRYAP
HCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLPQSMVAAQ
CCCHHHHCCC
>Mature Secondary Structure 
ANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIAGELRSSVCFAIRMGNF
CCCCCCCCCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHHHHHHHCEEEEEEECCC
NYVEKFPNSPNLARFGQDRKEITVLELTERWSELKRMEISSNTMSRYESIIKNMLPLIGE
HHHHHCCCCCCHHHHCCCCHHEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
NKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSSTVNNYMMLMAEIFQFGTDNG
CCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
YAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQQMRNLWSLAVYTGMRHGELCGL
CCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCC
AWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRVIYLIQPAIDALRNQAQLTRLGRQF
EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCCE
EVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGYHYAVNSINKIWAPIIKRAGIRYRNAY
EEEEHHHHHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH
QSRHTYACWSLSAGANPNFIATQMGHTDAQMVYKVYGKWMSEKSAEQVSLLNQALFRYAP
HCCCCEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
SLPQSMVAAQ
CCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]