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The map label for this gene is ycbB [H]

Identifier: 16764355

GI number: 16764355

Start: 1085020

End: 1086861

Strand: Direct

Name: ycbB [H]

Synonym: STM0995

Alternate gene names: 16764355

Gene position: 1085020-1086861 (Clockwise)

Preceding gene: 16764354

Following gene: 16764356

Centisome position: 22.34

GC content: 56.95

Gene sequence:

>1842_bases
ATGTTGCTTAATAAGATGTGTGGTCGTTGTCTGTCGGCAATCAGTTTATGCCTGGCCGTAACATTCGCTCCACTGTTCAA
TGCGCAGGCCGATGAGCCTGAAATGATACCTGGCGATAGCGCCGTTGCCGCGACGGATCTGGCTGGGCCGCAGAAGCAAT
CAGCCGCGACGGCGATTATGGCCGGGATTCAGCCGCTGCCGGAGGGCGTTTCAGCCGAGAAAGTCCGGGCTGATTTACAG
TCGCAGCTTCCTTCCGGCTATACGCCGGTCTATATGAGCCAGCTGACATTGCTGTATGCCGCGCGCGACATGAAGCCCAT
GTGGGATAATCGCGATGCGGTGAAAGCCTTCCAGCAACAGTTGGCGGAGGTGGCGATTGCCGGATTCCAGCCGCAGTTTA
CCGCCTGGGTGGCATTGTTGACCGATCCCGCCGTAAACGGTATGGCGCGCGATGTTGTGTTGTCAGACGCCATGATGGGC
TATCTCCATTTCATTGCGAATATCCCCGTCAAAGGCCAGCGCTGGTTATATAGCAACAAACCTTACGCATTGGCGACGCC
GCCAGTCTCGGTGATTAACCAGTGGCAAATCGCGCTGGAAGAGGGCCAGTTGCCGATGTTTGTCGCCAGCCTGGCGCCGC
AGCACCCACAGTATGCGCCCATGCATGATGCGCTGCTGAAGCTGGTGGCGGACTCTCGCCCGTGGCCGCAGTTGACCAAT
ACCGCGACGCTGCGCCCGGGGCAATGGAGTAACGATGTGCCTGCGCTGCGCGAAATATTACAGCGTACGGGGATGCTGGA
TGGCGGTCCAAAGATAGCCTTACCCGGCGATAACACTGCTGATAGCGCCGTCGTCAGCCCCTCCGCCGTGGTCGACGAAA
CATCGGTGGCGCACGACGAACCAACGGCCCGCCGTAGTAAGCCGGCTCCGGCGGCACGCGCCTACGATCGTGAACTGGTC
GAGGCGGTAAAGCGTTTTCAGGCATGGCAAGGGCTGGGGGCGGATGGCGTTATTGGCCCGGCGACGCGTAACTGGCTTAA
TATGACCCCCGCGCAACGCGCAGGCGTACTGGCACTGAATATCCAACGTTTACGCCTGCTGCCAGCGGAACTCTCTACCG
GTATTATGGTAAACATTCCCGCTTATTCGCTGGTCTACTATCAGAATGGCAACCAGGTGCTGGCTTCAAGGGTGATCGTC
GGGCGTCCCGATCGTAAAACGCCGATGATGAGCAGCGCGCTGAATAATGTGGTGGTGAACCCGCCGTGGAACGTTCCGCC
CACGCTTGCGCGTAAAGACATTTTACCGAAGGTGTGGAATGACCCAGGCTATCTGGAGCGCCATGGCTACACCGTGATGC
GCGGCTGGAACAGCAAAGAAGCGATCGATCCGTGGCAGGTTGACTGGGCCACCATTACGCCATCGAATCTTCCGTTCCGT
TTCCAGCAGGCGCCAGGCGCGCACAATTCGCTGGGGCGTTATAAATTTAATATGCCGAGTTCAGATGCGATCTATCTGCA
CGATACGCCTAACCATACTCTCTTTCAGCGTGACGCCAGGGCGTTAAGTTCCGGCTGCGTGCGGGTCAATAAGGCCTCTG
AGCTGGCGAATATGCTCTTGCAGGATGCTGGCTGGAACGATGCGCGGATCTCAGGCGCCCTGAAGCAAGGCGACACGCGG
TATGTCAATATCCGGCAGAACATTCCAGTAAATCTTTACTATCTGACCGCATTTGTCGGCGCAGATGGACGTATGCAATA
TCGTACAGATATTTACAATTACGATCTCACAGCGCGATCCAGCGCACAAATTGTGCCAAAGGTTGAACAATTAATCAGGT
AA

Upstream 100 bases:

>100_bases
GGCTGACTCGTCATACTAAACAAAAGCATTGGTTGCGGTTGACCCGCGCTGCGGGCAGCGCAGTCATGCGGAGTATGATA
ACGAAAACAGGGGGCAAGGG

Downstream 100 bases:

>100_bases
ATGAAGAAGTTCTGGTAAATATGTTGTCCTAATGTTTGGCTTCAACGGGGCGTTTCGCTGTAGACCCCCGTTGTGGCTGG
GGGAGGGCCATCTTGACGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 613; Mature: 613

Protein sequence:

>613_residues
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDLAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQ
SQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG
YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLTN
TATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAARAYDRELV
EAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIV
GRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFR
FQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGDTR
YVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR

Sequences:

>Translated_613_residues
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDLAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQ
SQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG
YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLTN
TATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAARAYDRELV
EAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIV
GRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFR
FQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGDTR
YVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR
>Mature_613_residues
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDLAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQ
SQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG
YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLTN
TATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAARAYDRELV
EAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIV
GRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFR
FQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGDTR
YVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=616, Percent_Identity=84.4155844155844, Blast_Score=1060, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 67389; Mature: 67389

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDLAGPQKQSAATAIM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
AGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQ
HCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMGYLHFIANIPVKGQRWLYSNK
HHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
PYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLTN
CEEEECCCHHHHHHHHEEEECCCCCEEHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
TATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDE
CEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEECCHHHHCCCCCCCCC
PTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALN
CCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCEEEEE
IQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVN
HHHHHEEHHHHCCCEEEECCCEEEEEEECCCEEEEHHEEECCCCCCCCHHHHHHCCEEEC
PPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFR
CCCCCCHHHHHHHCCHHHCCCCCCEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEE
FQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLL
EECCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHH
QDAGWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARS
HCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
SAQIVPKVEQLIR
CCHHHHHHHHHCC
>Mature Secondary Structure
MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAATDLAGPQKQSAATAIM
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHH
AGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAARDMKPMWDNRDAVKAFQQQ
HCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
LAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMGYLHFIANIPVKGQRWLYSNK
HHHHHHHCCCCHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
PYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQYAPMHDALLKLVADSRPWPQLTN
CEEEECCCHHHHHHHHEEEECCCCCEEHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCC
TATLRPGQWSNDVPALREILQRTGMLDGGPKIALPGDNTADSAVVSPSAVVDETSVAHDE
CEEECCCCCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCEECCHHHHCCCCCCCCC
PTARRSKPAPAARAYDRELVEAVKRFQAWQGLGADGVIGPATRNWLNMTPAQRAGVLALN
CCHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCEEEEE
IQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQVLASRVIVGRPDRKTPMMSSALNNVVVN
HHHHHEEHHHHCCCEEEECCCEEEEEEECCCEEEEHHEEECCCCCCCCHHHHHHCCEEEC
PPWNVPPTLARKDILPKVWNDPGYLERHGYTVMRGWNSKEAIDPWQVDWATITPSNLPFR
CCCCCCHHHHHHHCCHHHCCCCCCEECCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEE
FQQAPGAHNSLGRYKFNMPSSDAIYLHDTPNHTLFQRDARALSSGCVRVNKASELANMLL
EECCCCCCCCCCCEEECCCCCCEEEEECCCCCHHHHHHHHHHHHCCEEECHHHHHHHHHH
QDAGWNDARISGALKQGDTRYVNIRQNIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARS
HCCCCCCHHHHHHHHCCCEEEEEEECCCCEEEEEEEEEECCCCCEEEEEEEEEECCCCCC
SAQIVPKVEQLIR
CCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]