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The map label for this gene is ycaP [H]

Identifier: 16764336

GI number: 16764336

Start: 1060597

End: 1061289

Strand: Direct

Name: ycaP [H]

Synonym: STM0976

Alternate gene names: 16764336

Gene position: 1060597-1061289 (Clockwise)

Preceding gene: 16764332

Following gene: 16764337

Centisome position: 21.83

GC content: 51.52

Gene sequence:

>693_bases
ATGAAAGCATTTGATTTGCAACGAATGGCGCTGGATAACGTGCCGGTAGCGTTTTTGGGGGAAGTGGCGCTGCGTAGCTT
TTACACCTTTGTTCTGGTGTTTCTTTTCTTAAAGGTGACAGGACGACGCGGCGTACGGCAAATGTCGCTTTTTGAAGTGC
TGATCATTTTGACATTGGGGTCGGCGGCAGGCGACGTCGCGTTTTATGATGACGTTCCGATGCTCCCTGTTCTGGTGGTA
TTCATCACCCTGGCGCTGCTCTATCGCCTGGTTATGTGGCTGATGGCGCATAGTGAAAAGTTGGAAGATCTGCTGGAAGG
CAAGTCGGTGGTCATTGTTGAAGACGGCGAACTGGCGTGGGAAAAACTGCAGCGCTCGAACATGACGGAGTTTGAGTTTT
TTATGGAGCTTCGCTTGAATGGCGTTGAGCAACTGGGGCAGGTCAGACTGGCCATCCTGGAGACAAACGGACAAATCAGC
GTCTATTTCTTTGAAAATAAAGACGTTAAGCCGGGGTTAAGCATTCTTCCTGAGCACTGTACGCCACGCTTTATCGTGGC
GCCGGAGGCTGGCGACTATGCCTGCGTACGTTGCAGTGAAGTGATACGCATGAACGCCGGGGAAAAGCAATTATGTCCGC
GCTGCGCAAATCCAGAATGGACGAAGGCAAGCCGGGCTAAACGCGTTGTTTAA

Upstream 100 bases:

>100_bases
TACGGGTTTTATGTGACGGGCGCTATCTCGCCGGGACATCGGCGGAAATAAAAGTATTGGCTATGCTTTTACACTGGCAT
TCACAGGAAGAGCATAAAAA

Downstream 100 bases:

>100_bases
CAGCGAAAATATCGGATTTATACGGTTAATCCGGAAGATTCTGTTGTGTGACGCATGCCGCATTTTCTCCTCGCATTGTT
TTACCCATTGCGGCGCGTGT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MKAFDLQRMALDNVPVAFLGEVALRSFYTFVLVFLFLKVTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMLPVLVV
FITLALLYRLVMWLMAHSEKLEDLLEGKSVVIVEDGELAWEKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQIS
VYFFENKDVKPGLSILPEHCTPRFIVAPEAGDYACVRCSEVIRMNAGEKQLCPRCANPEWTKASRAKRVV

Sequences:

>Translated_230_residues
MKAFDLQRMALDNVPVAFLGEVALRSFYTFVLVFLFLKVTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMLPVLVV
FITLALLYRLVMWLMAHSEKLEDLLEGKSVVIVEDGELAWEKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQIS
VYFFENKDVKPGLSILPEHCTPRFIVAPEAGDYACVRCSEVIRMNAGEKQLCPRCANPEWTKASRAKRVV
>Mature_230_residues
MKAFDLQRMALDNVPVAFLGEVALRSFYTFVLVFLFLKVTGRRGVRQMSLFEVLIILTLGSAAGDVAFYDDVPMLPVLVV
FITLALLYRLVMWLMAHSEKLEDLLEGKSVVIVEDGELAWEKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQIS
VYFFENKDVKPGLSILPEHCTPRFIVAPEAGDYACVRCSEVIRMNAGEKQLCPRCANPEWTKASRAKRVV

Specific function: Unknown

COG id: COG2323

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0702 family [H]

Homologues:

Organism=Escherichia coli, GI1787135, Length=230, Percent_Identity=86.0869565217391, Blast_Score=410, Evalue=1e-116,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007353
- InterPro:   IPR023090 [H]

Pfam domain/function: PF04239 DUF421 [H]

EC number: NA

Molecular weight: Translated: 26059; Mature: 26059

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAFDLQRMALDNVPVAFLGEVALRSFYTFVLVFLFLKVTGRRGVRQMSLFEVLIILTLG
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
SAAGDVAFYDDVPMLPVLVVFITLALLYRLVMWLMAHSEKLEDLLEGKSVVIVEDGELAW
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
EKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQISVYFFENKDVKPGLSILPEHC
HHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEEECCCCCCCHHHCCCCC
TPRFIVAPEAGDYACVRCSEVIRMNAGEKQLCPRCANPEWTKASRAKRVV
CCCEEECCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHCCCC
>Mature Secondary Structure
MKAFDLQRMALDNVPVAFLGEVALRSFYTFVLVFLFLKVTGRRGVRQMSLFEVLIILTLG
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC
SAAGDVAFYDDVPMLPVLVVFITLALLYRLVMWLMAHSEKLEDLLEGKSVVIVEDGELAW
CCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHH
EKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQISVYFFENKDVKPGLSILPEHC
HHHHHCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEEEEECCCCCCCHHHCCCCC
TPRFIVAPEAGDYACVRCSEVIRMNAGEKQLCPRCANPEWTKASRAKRVV
CCCEEECCCCCCHHHHHHHHHHHCCCCCHHHCCCCCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]