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The map label for this gene is rzpD [H]

Identifier: 16764270

GI number: 16764270

Start: 977770

End: 978255

Strand: Direct

Name: rzpD [H]

Synonym: STM0908

Alternate gene names: 16764270

Gene position: 977770-978255 (Clockwise)

Preceding gene: 16764269

Following gene: 16764271

Centisome position: 20.13

GC content: 53.91

Gene sequence:

>486_bases
ATGAATCTGTTACCTGTATTGCTGAAAAAATACTGGTTGCAACTCTCAGTGACTTTGCTGATTGCTGCACTTGCATGGAC
AACAGAGCATTACCGCGACAACGCCATTCAGTATAAATCGCAGCGCGATACCGCCAGCCATCGCCTGACGCTGGCGAACG
CGACAATTACCGACATGACGAAGCGCCAGCGTGACATTGCCGCCCTCGATGCCAGATATACAAAGGAACTCGCTGATGCG
AAAGCTGAGAATGATGCTTTGCGCGATGATGTCGCCGCTGGCCGTCGTCGCCTGCTCGTCAACGCCACCTGTCCCGCAAT
GCCGACAGGTAAATCCACCTCCGCCGCCCGCGTGGATAATGCAGCCCGCCCCAGACTGGCAGACTCCGCTCAACGGGATT
ATTTCACCCTCAAAGAGCGAGTGACAACAATGCAAAAGCAACTGGAAGGGGCACAGGACTATATCCGGACACAATGTTTG
AAGTGA

Upstream 100 bases:

>100_bases
ATTCCGGCGACCTGGTACGTGTTACGCAGATCATCAACGGAGGGCAGAACGGCTTCGGCGATCGGCGGGAGCGCTTTGAG
AAAGCAAAATCGGTGCTGGT

Downstream 100 bases:

>100_bases
GGACTAAAATGGAAGAAGCCAGAATTCTGGTAATTATCATGTTCCTTTGTGGTCTGGTGTTAGGGTTCGCGTTTGGGATG
ATGTGCAACCGGGATAACCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MNLLPVLLKKYWLQLSVTLLIAALAWTTEHYRDNAIQYKSQRDTASHRLTLANATITDMTKRQRDIAALDARYTKELADA
KAENDALRDDVAAGRRRLLVNATCPAMPTGKSTSAARVDNAARPRLADSAQRDYFTLKERVTTMQKQLEGAQDYIRTQCL
K

Sequences:

>Translated_161_residues
MNLLPVLLKKYWLQLSVTLLIAALAWTTEHYRDNAIQYKSQRDTASHRLTLANATITDMTKRQRDIAALDARYTKELADA
KAENDALRDDVAAGRRRLLVNATCPAMPTGKSTSAARVDNAARPRLADSAQRDYFTLKERVTTMQKQLEGAQDYIRTQCL
K
>Mature_161_residues
MNLLPVLLKKYWLQLSVTLLIAALAWTTEHYRDNAIQYKSQRDTASHRLTLANATITDMTKRQRDIAALDARYTKELADA
KAENDALRDDVAAGRRRLLVNATCPAMPTGKSTSAARVDNAARPRLADSAQRDYFTLKERVTTMQKQLEGAQDYIRTQCL
K

Specific function: Necessary for host cell lysis. It is believed to code for an endopeptidase that cleaves the amino-carboxyl cross-link between the diaminopimelic acid and D-alanine residues in the murein component of the bacterial cell wall [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786769, Length=137, Percent_Identity=68.6131386861314, Blast_Score=190, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004929 [H]

Pfam domain/function: PF03245 Phage_lysis [H]

EC number: 3.4.-.- [C]

Molecular weight: Translated: 18183; Mature: 18183

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLPVLLKKYWLQLSVTLLIAALAWTTEHYRDNAIQYKSQRDTASHRLTLANATITDMT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCHHHHHH
KRQRDIAALDARYTKELADAKAENDALRDDVAAGRRRLLVNATCPAMPTGKSTSAARVDN
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCC
AARPRLADSAQRDYFTLKERVTTMQKQLEGAQDYIRTQCLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLLPVLLKKYWLQLSVTLLIAALAWTTEHYRDNAIQYKSQRDTASHRLTLANATITDMT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHEEEECCCHHHHHH
KRQRDIAALDARYTKELADAKAENDALRDDVAAGRRRLLVNATCPAMPTGKSTSAARVDN
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHCC
AARPRLADSAQRDYFTLKERVTTMQKQLEGAQDYIRTQCLK
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]