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The map label for this gene is cyoE [H]

Identifier: 16763820

GI number: 16763820

Start: 493354

End: 494244

Strand: Reverse

Name: cyoE [H]

Synonym: STM0439

Alternate gene names: 16763820

Gene position: 494244-493354 (Counterclockwise)

Preceding gene: 16763821

Following gene: 39546296

Centisome position: 10.18

GC content: 53.76

Gene sequence:

>891_bases
ATGATGTTTAAGCAATACCTGCAAGTAACGAAACCAGGCATCATCTTTGGCAACCTGATCTCGGTGATCGGGGGATTTCT
GCTGGCCTCAAAGGGCAGCATTGACTATCCCCTGTTCATTTATACGCTGGTCGGGGTGTCACTGGTTGTGGCGTCGGGTT
GTGTATTTAACAACTACATCGACAGGGATATCGACAGGAAGATGGAAAGGACCAAGAATCGGGTGCTGGTCAAAGGCCTG
ATTTCTCCTGGCGTCTCGCTGGTATACGCCACCCTGCTGGGTATTGCTGGCTTTATGCTGTTGTGGTTTGGCGCCAATCC
TCTGGCCTGCTGGCTGGGGGTAATGGGCTTCGTGGTCTACGTTGGCGTGTACAGCTTGTACATGAAGCGTCACTCCGTCT
ACGGAACGCTGATTGGTTCTCTCTCCGGCGCAGCGCCGCCGGTGATTGGCTACTGCGCCGTAACGGGCGACTTTGACAGC
GGCGCGGCGATCCTGTTGGCTATTTTCAGCCTCTGGCAGATGCCGCACTCTTACGCCATCGCCATTTTCCGCTTTAAGGA
CTATCAGGCGGCCAATATCCCGGTTCTGCCGGTGGTAAAAGGAATCTCAGTCGCTAAAAACCACATCACGCTGTACATCA
TTGCGTTTGCCGTTGCAACGCTAATGCTCACGTTGGGCGGTTATGCCGGTTACAAATACCTGGTGGTCGCCGCGGCGGTC
AGCGTTTGGTGGCTCGGCATGGCGCTACGCGGTTACAAAGTGGAAGATGATAAGGTCTGGGCGCGCAAGCTGTTCGGCTT
CTCTATCATTGCGATTACCGCGCTGAGTATCATGATGTCCGTTGATTTTATGGTGCCGAATTCGCAGAATCTGCTGACTT
ACGTCTGGTAA

Upstream 100 bases:

>100_bases
TCATCTTTACCGTGCTGATCATCGCCATCCTGGTTGTGGGCTCCATCTGGATTATGTGGAACCTCAACTACAACATGATG
ATGCACTAAGAGCGGCGAGT

Downstream 100 bases:

>100_bases
CAAGCGTTGCTATTGAAAAAACCGCCGTGTCACAAACGGCGGTTTTTTTATCCATTTCATCAGGCAGTAACGCCCCACGA
GTTATCGATTCTGAATAATA

Product: protoheme IX farnesyltransferase

Products: NA

Alternate protein names: Heme B farnesyltransferase; Heme O synthase [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGL
ISPGVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDS
GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLTLGGYAGYKYLVVAAAV
SVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALSIMMSVDFMVPNSQNLLTYVW

Sequences:

>Translated_296_residues
MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGL
ISPGVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDS
GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLTLGGYAGYKYLVVAAAV
SVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALSIMMSVDFMVPNSQNLLTYVW
>Mature_296_residues
MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGL
ISPGVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDS
GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLTLGGYAGYKYLVVAAAV
SVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALSIMMSVDFMVPNSQNLLTYVW

Specific function: Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group [H]

COG id: COG0109

COG function: function code O; Polyprenyltransferase (cytochrome oxidase assembly factor)

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily [H]

Homologues:

Organism=Homo sapiens, GI17921982, Length=168, Percent_Identity=38.0952380952381, Blast_Score=113, Evalue=2e-25,
Organism=Escherichia coli, GI1786631, Length=296, Percent_Identity=95.9459459459459, Blast_Score=572, Evalue=1e-164,
Organism=Caenorhabditis elegans, GI71998235, Length=252, Percent_Identity=28.5714285714286, Blast_Score=97, Evalue=8e-21,
Organism=Saccharomyces cerevisiae, GI6325085, Length=190, Percent_Identity=30.5263157894737, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI19921064, Length=276, Percent_Identity=28.9855072463768, Blast_Score=117, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006369
- InterPro:   IPR000537 [H]

Pfam domain/function: PF01040 UbiA [H]

EC number: 2.5.1.-

Molecular weight: Translated: 32390; Mature: 32390

Theoretical pI: Translated: 9.71; Mature: 9.71

Prosite motif: PS00943 UBIA ; PS00141 ASP_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYI
CCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
DRDIDRKMERTKNRVLVKGLISPGVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVY
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDSGAAILLAIFSLWQMPHSYAI
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHEE
AIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLTLGGYAGYKYLVVAAAV
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALSIMMSVDFMVPNSQNLLTYVW
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEC
>Mature Secondary Structure
MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVGVSLVVASGCVFNNYI
CCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHH
DRDIDRKMERTKNRVLVKGLISPGVSLVYATLLGIAGFMLLWFGANPLACWLGVMGFVVY
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
VGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDSGAAILLAIFSLWQMPHSYAI
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHCCCHHEE
AIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVATLMLTLGGYAGYKYLVVAAAV
EEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
SVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALSIMMSVDFMVPNSQNLLTYVW
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA