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The map label for this gene is araJ [H]

Identifier: 16763774

GI number: 16763774

Start: 444896

End: 446068

Strand: Reverse

Name: araJ [H]

Synonym: STM0394

Alternate gene names: 16763774

Gene position: 446068-444896 (Counterclockwise)

Preceding gene: 16763775

Following gene: 16763772

Centisome position: 9.18

GC content: 55.24

Gene sequence:

>1173_bases
ATGAAAAAAGTTATTTTTTCTTTGGCGCTGGGTACGTTCGGACTGGGGATGGCCGAGTTTGGCATTATGGGCGTGCTGAC
GGAGCTGGCACGCGATGTCGGGATAACAATTCCCGCCGCCGGGCATATGATCTCGTTTTACGCCTTCGGCGTCGTGCTGG
GCGCGCCTGTTATGGCGCTCTTTTCCAGCCGCTTTTCGCTTAAACATATACTGTTGTTTCTGGTCATGTTGTGCGTGATG
GGCAATGCCATATTTACCTTTTCCTCGTCATATCTGATGCTCGCCGTCGGCAGACTGGTTTCCGGCTTTCCGCACGGTGC
CTTTTTTGGCGTCGGCGCCATTGTCTTGTCAAAGATTATCCGCCCCGGGAAGGTCACCGCCGCCGTCGCGGGTATGGTTT
CAGGGATGACGGTGGCGAATCTGGTGGGCATTCCGTTCGGCACTTACCTGAGCCAGGAATTTAGCTGGCGCTACACCTTT
TTATTGATCGCGGTTTTCAACATCGCCGTGCTCACCGCAATTTTCTTCTGGGTGCCGGATATTCGCGACAAAGCCCAAGG
CAGCCTGCGCGAGCAGTTTCACTTCTTGCGTAGCCCCTCGCCGTGGCTCATTTTCGCCGCCACGATGTTCGGCAATGCGG
GCGTTTTTGCCTGGTTCAGCTATATCAAGCCATTTATGATGTACATCTCCGGTTTTTCGGAGACGAGCATGACGTTTATT
ATGATGCTGGTCGGGCTGGGGATGGTGTTAGGCAATCTGTTAAGCGGCAAACTCTCCGGCAGATATACTCCGCTGCGCAT
CGCGGTAGTGACTGACCTCGTTATCGTGCTTTCTCTCATGGCGCTCTTTTTCTTCAGCGGATACAAAACGACATCGCTGA
CTTTCGCGTTTATCTGCTGCGCTGGTCTGTTTGCGCTCTCTGCGCCGCTGCAAATCCTGCTACTGCAAAACGCCAAAGGC
GGCGAACTGCTGGGCGCGGCGGGAGGGCAAATCGCGTTTAATCTCGGTAGCGCGATTGGCGCCTGGTGCGGCGGGCTGAT
GCTGACACTAGGTTTTGCGTACCACTATGTGGCGCTTCCCGCCGCCCTGCTCTCGTTTTCCGCCATGTCGTCGTTGCTGG
TATACGGACGTCTAAAACACAAGCAGCCATCGGTCACGCCGGTTGCCGGATGA

Upstream 100 bases:

>100_bases
AATGGTATTACCTCGCGCTTATCCGCAAGCTATACGTTGATTGGCTGTGACAATTCACAGCCACAGCGCGCAACATGCGC
CTTTATTTTCGGCAGGTGGT

Downstream 100 bases:

>100_bases
CGCGCCATCCGGCTAACAACGTTACGCCAGCGGCCACAGCCAGGCCGCGCCGCGCACGCCGCTCGAATCGCCATGCCGCG
CCTTACGTACCGGCGTCTCG

Product: MFS transport protein AraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 390; Mature: 390

Protein sequence:

>390_residues
MKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMISFYAFGVVLGAPVMALFSSRFSLKHILLFLVMLCVM
GNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVGIPFGTYLSQEFSWRYTF
LLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPSPWLIFAATMFGNAGVFAWFSYIKPFMMYISGFSETSMTFI
MMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLVIVLSLMALFFFSGYKTTSLTFAFICCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQPSVTPVAG

Sequences:

>Translated_390_residues
MKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMISFYAFGVVLGAPVMALFSSRFSLKHILLFLVMLCVM
GNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVGIPFGTYLSQEFSWRYTF
LLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPSPWLIFAATMFGNAGVFAWFSYIKPFMMYISGFSETSMTFI
MMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLVIVLSLMALFFFSGYKTTSLTFAFICCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQPSVTPVAG
>Mature_390_residues
MKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMISFYAFGVVLGAPVMALFSSRFSLKHILLFLVMLCVM
GNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVGIPFGTYLSQEFSWRYTF
LLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPSPWLIFAATMFGNAGVFAWFSYIKPFMMYISGFSETSMTFI
MMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLVIVLSLMALFFFSGYKTTSLTFAFICCAGLFALSAPLQILLLQNAKG
GELLGAAGGQIAFNLGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQPSVTPVAG

Specific function: May be involved in either the transport or processing of arabinose polymers [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=388, Percent_Identity=85.0515463917526, Blast_Score=651, Evalue=0.0,
Organism=Escherichia coli, GI1787947, Length=385, Percent_Identity=31.9480519480519, Blast_Score=172, Evalue=5e-44,
Organism=Escherichia coli, GI145693198, Length=395, Percent_Identity=24.5569620253165, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI1787808, Length=258, Percent_Identity=25.968992248062, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41755; Mature: 41755

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744033; 9278503 [H]