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The map label for this gene is yadE [H]

Identifier: 16763569

GI number: 16763569

Start: 209795

End: 211024

Strand: Direct

Name: yadE [H]

Synonym: STM0179

Alternate gene names: 16763569

Gene position: 209795-211024 (Clockwise)

Preceding gene: 16763568

Following gene: 16763579

Centisome position: 4.32

GC content: 50.33

Gene sequence:

>1230_bases
ATGGTTATGCGCGTTGTTCTTATCTTGCTGTTCTTTTTCGCCGGTAATGTGTTGGCTGCCTTGCCCGCTCGTTATATGCA
AACGACGAAAGATGCCGCCATCTGGTCGCAGATTGGCGACAAAATGGTGACCGTAGGGAATATCCGCGCCGGACAAATTC
TTTCCGTAACGCCTGTTGCGGCTGATTATTATGCCTTTAAATTCGGCTTCGGTGTGGGCTTTATCGATAAAGGCCATCTG
GAATCCGTGCAGGGAAAACAAAAAGTGGAAGATGGCCTGGGCGATCTTAACAAGCCGCTCAGCAATCAGAATCTGGTGAC
CTGGAAGGACACGCCGGTGTATAACGCGCCGGACATCAGTAGCGCCCCGTTTGGCGTATTGGTGGATAATTTGCGTTACC
CCATTATTAGCAAGCTGAAAGGCCGGCTACATCAAACCTGGTATCAGATCCGTATTGGCGACAGGCTGGCTTATGTCAAC
GCCATGGATGCGCAGGAAGACAACGGCATTCCGATTTTGACCTATCATCACATTTTACGTGATGAAGAGAATACCCGTTT
TCGCCATACCTCCACCACGACTTCGGTTCGGGCATTCAGCAACCAAATGACCTGGCTTCGCGATCGCGGCTATGCCACGT
TGACGATGTACCAACTGGAGGATTACATCTATAACCGCGCTAATTTCCCGGCGCGCGCGGTGGCTATCACCTTTGATGAT
GGCCTTAAATCGGTGAGTCGCTATGCGTATCCGGTATTAAAGCAGTACGATATGAAAGCGACGGCATTTATTATCTCATC
GCGTATTAAGCGCCATCCGCAAAAATGGAATCCCAGGTCGCTGCAATTTATGAGCGTGTCCGAATTGCGCAAGATAAGCG
ATGTTTTTGATTTTCAGTCGCATACCCATTTTTTACACCGGGTAGACGGGCATCGCCGCCCGATTTTATATAGCCGCAGC
TACCATAATATTCTGTTTGATTTTGAACGCTCGCGGCGGGCGCTCGCACAGTTTACTCCGCACGTATTTTATCTTTCTTA
TCCCTTTGGCGGTTATAACGCGACCGCGATCAAAGCAGCAAAAGACGCCGGTTTCCATCTGGCGGTAACCACGGTGAGAG
GGAAGGTGAAGCCGGGAGATAATCCGATGCTGCTCAAAAGGCTGTATATTCTGCGCACGGATTCGCTGGAAACCATGTCG
CGGCTGATCAGCAACCAGCCGCAGGGATAA

Upstream 100 bases:

>100_bases
CCGCCTTTTGTATTGCTGCATGATTCGTATGAGTTTTGATCAATACCATTGACGACGCTTTTGCTACAATGACGGCGTTT
TTTCGCCTCGGTTATGATAT

Downstream 100 bases:

>100_bases
GGACTATCAGGCAACCTGTACCGGAATAGCTTTCGCGGTGCGCTTCATTTCGTTGTCGCCTTCAAAATAGGCCACTTTCG
GACGCCATGTACGCGCTTCT

Product: xylanase/chitin deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVTVGNIRAGQILSVTPVAADYYAFKFGFGVGFIDKGHL
ESVQGKQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPDISSAPFGVLVDNLRYPIISKLKGRLHQTWYQIRIGDRLAYVN
AMDAQEDNGIPILTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQLEDYIYNRANFPARAVAITFDD
GLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKWNPRSLQFMSVSELRKISDVFDFQSHTHFLHRVDGHRRPILYSRS
YHNILFDFERSRRALAQFTPHVFYLSYPFGGYNATAIKAAKDAGFHLAVTTVRGKVKPGDNPMLLKRLYILRTDSLETMS
RLISNQPQG

Sequences:

>Translated_409_residues
MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVTVGNIRAGQILSVTPVAADYYAFKFGFGVGFIDKGHL
ESVQGKQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPDISSAPFGVLVDNLRYPIISKLKGRLHQTWYQIRIGDRLAYVN
AMDAQEDNGIPILTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQLEDYIYNRANFPARAVAITFDD
GLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKWNPRSLQFMSVSELRKISDVFDFQSHTHFLHRVDGHRRPILYSRS
YHNILFDFERSRRALAQFTPHVFYLSYPFGGYNATAIKAAKDAGFHLAVTTVRGKVKPGDNPMLLKRLYILRTDSLETMS
RLISNQPQG
>Mature_409_residues
MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVTVGNIRAGQILSVTPVAADYYAFKFGFGVGFIDKGHL
ESVQGKQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPDISSAPFGVLVDNLRYPIISKLKGRLHQTWYQIRIGDRLAYVN
AMDAQEDNGIPILTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQLEDYIYNRANFPARAVAITFDD
GLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKWNPRSLQFMSVSELRKISDVFDFQSHTHFLHRVDGHRRPILYSRS
YHNILFDFERSRRALAQFTPHVFYLSYPFGGYNATAIKAAKDAGFHLAVTTVRGKVKPGDNPMLLKRLYILRTDSLETMS
RLISNQPQG

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786322, Length=409, Percent_Identity=81.9070904645477, Blast_Score=716, Evalue=0.0,
Organism=Escherichia coli, GI1787260, Length=237, Percent_Identity=23.6286919831224, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 46796; Mature: 46796

Theoretical pI: Translated: 10.25; Mature: 10.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVTVGNIRAGQILSVTPVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCH
ADYYAFKFGFGVGFIDKGHLESVQGKQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPDIS
HHHEEEEEECCCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
SAPFGVLVDNLRYPIISKLKGRLHQTWYQIRIGDRLAYVNAMDAQEDNGIPILTYHHILR
CCCHHHHHHCCCCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCCCCEEEEEHHHHC
DEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQLEDYIYNRANFPARAVAITFDD
CCCCCCEEECCCCHHHHHHHHCHHHHHCCCCEEEEEEEHHHHHHCCCCCCEEEEEEEECH
GLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKWNPRSLQFMSVSELRKISDVFDFQS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHH
HTHFLHRVDGHRRPILYSRSYHNILFDFERSRRALAQFTPHVFYLSYPFGGYNATAIKAA
HHHHHHHCCCCCCCEEEECCCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEC
KDAGFHLAVTTVRGKVKPGDNPMLLKRLYILRTDSLETMSRLISNQPQG
CCCCCEEEEEEEECEECCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCC
>Mature Secondary Structure
MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVTVGNIRAGQILSVTPVA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEECCCH
ADYYAFKFGFGVGFIDKGHLESVQGKQKVEDGLGDLNKPLSNQNLVTWKDTPVYNAPDIS
HHHEEEEEECCCCCCCCCCHHHHCHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCC
SAPFGVLVDNLRYPIISKLKGRLHQTWYQIRIGDRLAYVNAMDAQEDNGIPILTYHHILR
CCCHHHHHHCCCCHHHHHHHHHHHHEEEEEEECCEEEEEEECCCCCCCCCEEEEEHHHHC
DEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQLEDYIYNRANFPARAVAITFDD
CCCCCCEEECCCCHHHHHHHHCHHHHHCCCCEEEEEEEHHHHHHCCCCCCEEEEEEEECH
GLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKWNPRSLQFMSVSELRKISDVFDFQS
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHHHHHH
HTHFLHRVDGHRRPILYSRSYHNILFDFERSRRALAQFTPHVFYLSYPFGGYNATAIKAA
HHHHHHHCCCCCCCEEEECCCCCCEEEEHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEC
KDAGFHLAVTTVRGKVKPGDNPMLLKRLYILRTDSLETMSRLISNQPQG
CCCCCEEEEEEEECEECCCCCHHHHHHHHHHCCCCHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503 [H]