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The map label for this gene is yicJ [H]

Identifier: 16763539

GI number: 16763539

Start: 171810

End: 173216

Strand: Reverse

Name: yicJ [H]

Synonym: STM0149

Alternate gene names: 16763539

Gene position: 173216-171810 (Counterclockwise)

Preceding gene: 16763540

Following gene: 16763538

Centisome position: 3.57

GC content: 50.96

Gene sequence:

>1407_bases
ATGGATAAGGGCAGACTTTCGGTAAGAGAGAAAATCGGGTATGGCATGGGTGACGCCGGATGTAACATTATTTTTGGCGC
TATCATGCTGTTTGTTAATTACTTTTATACGGATATTTTTGGTCTTGCCCCGGCGTTAGTCGGTGTTTTACTCCTTTCAG
TACGCGTTATCGATGCCGTTACCGATCCGGTGATGGGCGCGCTTGCCGATCGTACCCAAAGTAAATATGGTCGTTTCCGC
CCCTGGCTACTGTGGATTGCATTTCCCTACGCGCTGTTCAGCGTTCTGATGTTCACGACGCCGGACTGGGGCTATAACAG
CAAAGTTGTCTATGCTTTCGTCACCTATTTTCTGCTTTCCGTGACCTACACCGCCATCAATATTCCCTATTGCTCACTGG
GCGGCGTGATCACTAACGATCCAAAAGAGCGCGTGGCCTGTCAGGCTTATCGCTTCGTATTAGTCGGCATCGCGACGCTG
TTGCTATCGTTAACGCTATTGCCGATGGTGGACTGGTTTGGCGGCGGCGACAAAGCCAAAGGCTATCAGTTGGCGATGAC
CGTGCTGGCGATTATCGGCATGGGTATGTTTCTGTTCTGCTTTGCCAGCGTCCGCGAACGCGTCCGCCCTGCCGTTCCGA
CGCACGATGATATGAAGAATGATTTCAAAGATGTGTGGAAAAACGATCAATGGGTACGCATTCTGCTATTGACCTTATGT
AACGTCTGCCCGGGGTTTATCCGTATGGCGGCGACCATGTATTACGTCACCTGGGTGATGGGACAAAGCACCCATTTCGC
TACGCTTTTTATTAGTCTTGGCGTGGTCGGTATGATGATCGGCAGTATGCTGGCAAAAGTCTTAACCGATCGCTGGTGTA
AATTGAAGGTATTTTTCTGGACCAATATTGCGCTGGCGATTTTCTCCTGCGCGTTCTATTTCTTTGATCCGAAAGCCACC
GTGATGATAGTGGCGCTCTACTTCCTGCTCAATATTCTGCATCAGATCCCTTCCCCGCTGCACTGGTCGCTGATGGCGGA
CGTCGATGATTACGGCGAATGGAAAACCGGCAAACGCATTACCGGTATCAGCTTCTCCGGTAACCTGTTCTTCCTGAAAC
TGGGCCTGGCGATTGCCGGGGCGATGGTCGGCTTTTTGCTCTCCTGGTACGGTTATGACGCCAGCGCCAAAGCGCAAAGC
GCCTCGGCGATGAACGGTATTATGCTGTTGTTTACCGTTATCCCCGGCGTTGGCTATCTGATTACCGCAGGCGTGGTACG
TCTGCTGAAAGTTGACCGTGAACTGATGAAAAAAATCCAGGACGATTTGGAAAAACGTCGCACTAATTACCGCGAATTGA
GTGAGTTGCAGGAGCTCAACGCCGCTGAAAGCGTAAGGAAAGCCTGA

Upstream 100 bases:

>100_bases
CGTATAACCATTTTATCCATATCAGCGGCGTGATCCTGCTACGCAAAAAAAAGCTCGCAGGCGAATAATTACCGCCATCA
TCTGATGGGGAGAAGTCTCA

Downstream 100 bases:

>100_bases
TGGCAAACTGGCCAAACCCGTTTATTGAACAACGTGCCGATCCGTTTATTTTACGCGACGGCAGCGATTACTACTTTATT
GCCTCCGTACCGGAATATGA

Product: Na+/galactoside symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MDKGRLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFR
PWLLWIAFPYALFSVLMFTTPDWGYNSKVVYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
LLSLTLLPMVDWFGGGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKAT
VMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQS
ASAMNGIMLLFTVIPGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELNAAESVRKA

Sequences:

>Translated_468_residues
MDKGRLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFR
PWLLWIAFPYALFSVLMFTTPDWGYNSKVVYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
LLSLTLLPMVDWFGGGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKAT
VMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQS
ASAMNGIMLLFTVIPGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELNAAESVRKA
>Mature_468_residues
MDKGRLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFR
PWLLWIAFPYALFSVLMFTTPDWGYNSKVVYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL
LLSLTLLPMVDWFGGGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKAT
VMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQS
ASAMNGIMLLFTVIPGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELNAAESVRKA

Specific function: Unknown

COG id: COG2211

COG function: function code G; Na+/melibiose symporter and related transporters

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:galactoside symporter (TC 2.A.2) family [H]

Homologues:

Organism=Homo sapiens, GI122937339, Length=481, Percent_Identity=22.8690228690229, Blast_Score=75, Evalue=2e-13,
Organism=Escherichia coli, GI87082306, Length=461, Percent_Identity=44.468546637744, Blast_Score=418, Evalue=1e-118,
Organism=Escherichia coli, GI1786466, Length=448, Percent_Identity=38.6160714285714, Blast_Score=328, Evalue=6e-91,
Organism=Escherichia coli, GI1787902, Length=461, Percent_Identity=30.3687635574837, Blast_Score=183, Evalue=2e-47,
Organism=Escherichia coli, GI48994989, Length=459, Percent_Identity=27.0152505446623, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI145693206, Length=451, Percent_Identity=26.6075388026608, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1790561, Length=458, Percent_Identity=27.5109170305677, Blast_Score=167, Evalue=2e-42,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016196
- InterPro:   IPR001927
- InterPro:   IPR018043 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52444; Mature: 52444

Theoretical pI: Translated: 9.16; Mature: 9.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKGRLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAPALVGVLLLSVRVIDAV
CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TDPVMGALADRTQSKYGRFRPWLLWIAFPYALFSVLMFTTPDWGYNSKVVYAFVTYFLLS
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
VTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATLLLSLTLLPMVDWFGGGDKAK
HHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDMKNDFKDVWKNDQWVRILLLTLC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
NVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVVGMMIGSMLAKVLTDRWCKLKVFFW
HHCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHH
TNIALAIFSCAFYFFDPKATVMIVALYFLLNILHQIPSPLHWSLMADVDDYGEWKTGKRI
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHCCCCCCCCEE
TGISFSGNLFFLKLGLAIAGAMVGFLLSWYGYDASAKAQSASAMNGIMLLFTVIPGVGYL
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
ITAGVVRLLKVDRELMKKIQDDLEKRRTNYRELSELQELNAAESVRKA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7686882; 9278503 [H]