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The map label for this gene is secY [H]

Identifier: 167626019

GI number: 167626019

Start: 5014583

End: 5015923

Strand: Reverse

Name: secY [H]

Synonym: Shal_4114

Alternate gene names: 167626019

Gene position: 5015923-5014583 (Counterclockwise)

Preceding gene: 167626020

Following gene: 167626018

Centisome position: 95.96

GC content: 43.77

Gene sequence:

>1341_bases
ATGGCAAAACCAGGACTTGATTTAAAAAGCGCGAAAGGCGGTTTATCAGAATTGAAAACCCGCCTCCTGTTCGTGATTGG
TGCAATTATCGTCTTTAGAGCCGGTTCGTTTGTACCAATTCCTGGTATTGACGCTGCTGTACTAGCAGAGCTGTTTAATC
AGCAAAAGGGTACCATCTTAGGCATGTTTAACATGTTCTCTGGTGGTGCTCTTGAACGTGCCTCTATCTTTGCATTAGGT
ATCATGCCGTATATTTCGGCATCGATTATTATGCAGTTGTTGACTGTGGTTCATCCTGCACTTGCTGAATTGAAAAAAGA
AGGCGAGTCGGGAAGAAAGAAAATCAGTCAATATACTCGATACGGCACATTGGTCCTGGGTACATTCCAGGCAATCGGTA
TCGCAACTGGGTTACCAAACTTGGTTCCAGGGTTAGTAGTTAACCTCGGATTCAGTTTCTACTTCGTTGCTGTAGTGAGC
TTAGTGACAGGAACAATGTTCCTAATGTGGCTAGGTGAGCAAATTACCGAAAGAGGCATAGGTAACGGTATCTCGATTCT
TATTTTCGCAGGTATTGTTGCTGGTCTGCCATCTGCTATCGGTCAAACGGCCGAGCAGGCGCGTCAAGGCGACTTGAATG
TACTAGTATTGTTGTTGCTGGCAGTGATTGTTTTCGCTGTTACTTATTTTGTGGTATTCGTTGAGCGTGGACAGCGTCGT
ATCGTTGTTAACTATGCGAAGCGTCAGCAAGGCCGTAAGGTGTTTGCAGCGCAGAGCACTCATTTACCACTTAAGTTAAA
TATGGCTGGTGTAATCCCGCCTATTTTTGCGTCCAGCATCATTTTGTTCCCAGGCACACTGGCTCAGTGGTTTGGTCAAA
ATGAGTCCATGTCATGGTTAAGTGATTTTTCACTAGCTGTGTCACCAGGACAACCGCTGTACTCATTATTATATGCAACA
GCAATTATTTTCTTCTGTTTCTTCTATACTGCGTTGGTGTTTAACCCTCGCGAAACAGCTGATAACTTGAAGAAAAGCGG
TGCGTTTATTCCCGGGATTCGTCCTGGAGAACAGACTTCGCGTTACATTGATAAAGTTATGACCCGCCTAACATTAGCTG
GCGCGTTATATATAACGTTTATCTGCTTAATTCCGGAGTTCATGTTAATTGCGTGGAAAGTACAGTTCTATTTTGGCGGT
ACTTCACTACTAATTATGGTAGTCGTAATCATGGACTTCATGGCTCAGGTTCAGACGCATATGATGTCTCATCAGTATGA
GTCTGTAATGAAGAAGGCTAACTTGGTAAACAAAGCGAACTTAGATCGCTTTGGTCGCTAA

Upstream 100 bases:

>100_bases
ACCATTGAGCGCCCTGTGACTGTAAAAGGTCTGAAGGTAACCCAAGGTGCACGTGCAGCTATTGAAGCTGCCGGTGGCAA
GATCGAGGAATAATACGTCG

Downstream 100 bases:

>100_bases
GATAGCAATCTCGGAGTGATGAAATGAAAGTTCGAGCTTCCGTGAAGAAGATCTGCCGTAACTGCAAGATCGTAAGGCGT
AGTGGCGTTGTACGTGTGAT

Product: preprotein translocase subunit SecY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MAKPGLDLKSAKGGLSELKTRLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFNQQKGTILGMFNMFSGGALERASIFALG
IMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRYGTLVLGTFQAIGIATGLPNLVPGLVVNLGFSFYFVAVVS
LVTGTMFLMWLGEQITERGIGNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIVFAVTYFVVFVERGQRR
IVVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSLAVSPGQPLYSLLYAT
AIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGG
TSLLIMVVVIMDFMAQVQTHMMSHQYESVMKKANLVNKANLDRFGR

Sequences:

>Translated_446_residues
MAKPGLDLKSAKGGLSELKTRLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFNQQKGTILGMFNMFSGGALERASIFALG
IMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRYGTLVLGTFQAIGIATGLPNLVPGLVVNLGFSFYFVAVVS
LVTGTMFLMWLGEQITERGIGNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIVFAVTYFVVFVERGQRR
IVVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSLAVSPGQPLYSLLYAT
AIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGG
TSLLIMVVVIMDFMAQVQTHMMSHQYESVMKKANLVNKANLDRFGR
>Mature_445_residues
AKPGLDLKSAKGGLSELKTRLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFNQQKGTILGMFNMFSGGALERASIFALGI
MPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTRYGTLVLGTFQAIGIATGLPNLVPGLVVNLGFSFYFVAVVSL
VTGTMFLMWLGEQITERGIGNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIVFAVTYFVVFVERGQRRI
VVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPPIFASSIILFPGTLAQWFGQNESMSWLSDFSLAVSPGQPLYSLLYATA
IIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTSRYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGGT
SLLIMVVVIMDFMAQVQTHMMSHQYESVMKKANLVNKANLDRFGR

Specific function: Involved in protein export. Interacts with secA and secE to allow the translocation of proteins across the plasma membrane, by forming part of a channel [H]

COG id: COG0201

COG function: function code U; Preprotein translocase subunit SecY

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secY/SEC61-alpha family [H]

Homologues:

Organism=Escherichia coli, GI1789696, Length=438, Percent_Identity=82.8767123287671, Blast_Score=666, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002208
- InterPro:   IPR023201 [H]

Pfam domain/function: PF00344 SecY [H]

EC number: NA

Molecular weight: Translated: 48763; Mature: 48631

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: PS00755 SECY_1 ; PS00756 SECY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
AKPGLDLKSAKGGLSELKTRLLFVIGAIIVFRAGSFVPIPGIDAAVLAELFNQQKGTIL
CCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCEE
GMFNMFSGGALERASIFALGIMPYISASIIMQLLTVVHPALAELKKEGESGRKKISQYTR
EEHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
YGTLVLGTFQAIGIATGLPNLVPGLVVNLGFSFYFVAVVSLVTGTMFLMWLGEQITERGI
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GNGISILIFAGIVAGLPSAIGQTAEQARQGDLNVLVLLLLAVIVFAVTYFVVFVERGQRR
CCCHHHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
IVVNYAKRQQGRKVFAAQSTHLPLKLNMAGVIPPIFASSIILFPGTLAQWFGQNESMSWL
EEEEHHHHHCCCEEEEECCCCCCEEECCHHCCCHHHHHHHHHCCCHHHHHCCCCCCHHHH
SDFSLAVSPGQPLYSLLYATAIIFFCFFYTALVFNPRETADNLKKSGAFIPGIRPGEQTS
HHCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHH
RYIDKVMTRLTLAGALYITFICLIPEFMLIAWKVQFYFGGTSLLIMVVVIMDFMAQVQTH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHH
MMSHQYESVMKKANLVNKANLDRFGR
HHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9322765; 10952301 [H]