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The map label for this gene is tnpX [C]

Identifier: 167625957

GI number: 167625957

Start: 4935054

End: 4936508

Strand: Reverse

Name: tnpX [C]

Synonym: Shal_4052

Alternate gene names: 167625957

Gene position: 4936508-4935054 (Counterclockwise)

Preceding gene: 167625960

Following gene: 167625956

Centisome position: 94.44

GC content: 35.95

Gene sequence:

>1455_bases
ATGTTAAGGCTCAAGTTGAATGATAGATCGTTATTTGGTAACGATGCTGGCGAGGATGAATCTCTGGAAGTATTGAACTC
ATACTTTATTGAAAATGATGAATTTGATGATTTTTATGATGATGAGCATCGTTTATGCGTGGTAAACGCTAGAAAAGGTA
TGGGTAAGTCAACCCTATTGTCAAAACTTGATTATGACTTGGCATTTAAAAAGGAATATAACAGTCCAATAGTTATTCGT
GTTACGGGAAACTCATTGCTTGGGTTAGGGGACTTTAATGGTAAGGACTCTGCATACCTTGAAAATTATTGGAAGCAAAT
TATCTGTAAGGAAATTAACATCCATATAGGTAAGACCATTAACTTCGCTTTAACTAGTGACGAAATGTCGATGGTCGAGA
TCTCTGAACTAGAAGGAATGAAGAGCAAAAACTTAATTGGTGGGCTCATATCTCGAATAAAAGGTAAAATCCCTGTACTT
GGTTCTGAAACTCAAGGGTTTCAACCGGAAAAATTAGAAAATCTTCTTAACAACTATTTAGAAGAAAATAGTGACAAAAA
AGTATGGCTACTGGTTGATGATATTGACGCAAAATATATAGACAGTGAAGATTTTCAGTATCGAATCAGCTCTTTCTTCA
GTGCAGTCCGTGGACTTTGTTTTGATGTCAAAAACTTGAATGTCAGAGCAACAGTGCGCTCTGATGTCTGGACAAACTTA
AGACATGTAGAAGACCTTGATAAATGGGATCAATACATTGTAAATATTGTTTGGACAAAAAAACAGATGAGAGAGATGCT
AGCGAAGAAAATACTTTCTTATGTTCAAAGAAAGCACCCCTTGTCTCTCGAGGCAAAGTATAAGTACGACCGAGACTATA
ACAAACTATTCCAACTGATATTTATTAGTCCTATAAAATGGGCGGGAAAAGAAGCACCTGTTTTTGATGCGATTAACGCA
TTTTCCAATCACCGTCCTCGTTCTATGGGGCAATTATGTAGAATGGCTTCAATTCAGGCTCATAAGAGTCGTTGCAAAGT
GTCCTTGAATCAGTTTAATGAGGTTTTGACAAAATATGGTCAAAATCGACGTGATGATTTGATAAAAGAACATCAACACC
AATTTCCTGAACTGGAAAACTTGATCGATTCATTTAGAGCAGGTCAAAAAGAGTATACTTTTTCAGAGTTGGAAATGATA
TTGGATAGTAAGTTTATAAAAGGGCGAGATGCGTCAGACATTCCTGTTATTGACGGTAAACCATACTGTGAACTTATCGA
CTTAGGACACTTTGTATACAAAATTGGTTTGATATCTAAGCTGCCTGATAGCTCTCAGAAATTTACATATTATACTGATG
ATCCAGATCTATTTTATTCTCAGCAAAACCGAAATAATGATCTTACTTGGACTGTGCACCCAAGCTATCGAAAGTATCTA
AATATCAACGGTTAA

Upstream 100 bases:

>100_bases
GAATCCACGTCATTCGTTATCTATTTTAGCGCAATATGCAACAGAACCTTTTGAGTATATAGTATTGAAATTAGTTGTTA
TTAGGAAGTGTCGTGTATAT

Downstream 100 bases:

>100_bases
CAAGATAGCTGACAAGAACTTAAGATTCTTTTTCTAATCTGATAGAAACGGTTTAGCTCAGTGACCGTAAATCGTTTTTG
TCCAACTTCGAGTCAGCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 484; Mature: 484

Protein sequence:

>484_residues
MLRLKLNDRSLFGNDAGEDESLEVLNSYFIENDEFDDFYDDEHRLCVVNARKGMGKSTLLSKLDYDLAFKKEYNSPIVIR
VTGNSLLGLGDFNGKDSAYLENYWKQIICKEINIHIGKTINFALTSDEMSMVEISELEGMKSKNLIGGLISRIKGKIPVL
GSETQGFQPEKLENLLNNYLEENSDKKVWLLVDDIDAKYIDSEDFQYRISSFFSAVRGLCFDVKNLNVRATVRSDVWTNL
RHVEDLDKWDQYIVNIVWTKKQMREMLAKKILSYVQRKHPLSLEAKYKYDRDYNKLFQLIFISPIKWAGKEAPVFDAINA
FSNHRPRSMGQLCRMASIQAHKSRCKVSLNQFNEVLTKYGQNRRDDLIKEHQHQFPELENLIDSFRAGQKEYTFSELEMI
LDSKFIKGRDASDIPVIDGKPYCELIDLGHFVYKIGLISKLPDSSQKFTYYTDDPDLFYSQQNRNNDLTWTVHPSYRKYL
NING

Sequences:

>Translated_484_residues
MLRLKLNDRSLFGNDAGEDESLEVLNSYFIENDEFDDFYDDEHRLCVVNARKGMGKSTLLSKLDYDLAFKKEYNSPIVIR
VTGNSLLGLGDFNGKDSAYLENYWKQIICKEINIHIGKTINFALTSDEMSMVEISELEGMKSKNLIGGLISRIKGKIPVL
GSETQGFQPEKLENLLNNYLEENSDKKVWLLVDDIDAKYIDSEDFQYRISSFFSAVRGLCFDVKNLNVRATVRSDVWTNL
RHVEDLDKWDQYIVNIVWTKKQMREMLAKKILSYVQRKHPLSLEAKYKYDRDYNKLFQLIFISPIKWAGKEAPVFDAINA
FSNHRPRSMGQLCRMASIQAHKSRCKVSLNQFNEVLTKYGQNRRDDLIKEHQHQFPELENLIDSFRAGQKEYTFSELEMI
LDSKFIKGRDASDIPVIDGKPYCELIDLGHFVYKIGLISKLPDSSQKFTYYTDDPDLFYSQQNRNNDLTWTVHPSYRKYL
NING
>Mature_484_residues
MLRLKLNDRSLFGNDAGEDESLEVLNSYFIENDEFDDFYDDEHRLCVVNARKGMGKSTLLSKLDYDLAFKKEYNSPIVIR
VTGNSLLGLGDFNGKDSAYLENYWKQIICKEINIHIGKTINFALTSDEMSMVEISELEGMKSKNLIGGLISRIKGKIPVL
GSETQGFQPEKLENLLNNYLEENSDKKVWLLVDDIDAKYIDSEDFQYRISSFFSAVRGLCFDVKNLNVRATVRSDVWTNL
RHVEDLDKWDQYIVNIVWTKKQMREMLAKKILSYVQRKHPLSLEAKYKYDRDYNKLFQLIFISPIKWAGKEAPVFDAINA
FSNHRPRSMGQLCRMASIQAHKSRCKVSLNQFNEVLTKYGQNRRDDLIKEHQHQFPELENLIDSFRAGQKEYTFSELEMI
LDSKFIKGRDASDIPVIDGKPYCELIDLGHFVYKIGLISKLPDSSQKFTYYTDDPDLFYSQQNRNNDLTWTVHPSYRKYL
NING

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56322; Mature: 56322

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLKLNDRSLFGNDAGEDESLEVLNSYFIENDEFDDFYDDEHRLCVVNARKGMGKSTLL
CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
SKLDYDLAFKKEYNSPIVIRVTGNSLLGLGDFNGKDSAYLENYWKQIICKEINIHIGKTI
HHHCCCEEEHCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEECCEE
NFALTSDEMSMVEISELEGMKSKNLIGGLISRIKGKIPVLGSETQGFQPEKLENLLNNYL
EEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHH
EENSDKKVWLLVDDIDAKYIDSEDFQYRISSFFSAVRGLCFDVKNLNVRATVRSDVWTNL
HCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECHHHHHHH
RHVEDLDKWDQYIVNIVWTKKQMREMLAKKILSYVQRKHPLSLEAKYKYDRDYNKLFQLI
HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
FISPIKWAGKEAPVFDAINAFSNHRPRSMGQLCRMASIQAHKSRCKVSLNQFNEVLTKYG
HCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHC
QNRRDDLIKEHQHQFPELENLIDSFRAGQKEYTFSELEMILDSKFIKGRDASDIPVIDGK
CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC
PYCELIDLGHFVYKIGLISKLPDSSQKFTYYTDDPDLFYSQQNRNNDLTWTVHPSYRKYL
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCCCCCEE
NING
ECCC
>Mature Secondary Structure
MLRLKLNDRSLFGNDAGEDESLEVLNSYFIENDEFDDFYDDEHRLCVVNARKGMGKSTLL
CEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCHHHHH
SKLDYDLAFKKEYNSPIVIRVTGNSLLGLGDFNGKDSAYLENYWKQIICKEINIHIGKTI
HHHCCCEEEHCCCCCCEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEECCEE
NFALTSDEMSMVEISELEGMKSKNLIGGLISRIKGKIPVLGSETQGFQPEKLENLLNNYL
EEEEECCCCCHHHHHHHCCCCCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHH
EENSDKKVWLLVDDIDAKYIDSEDFQYRISSFFSAVRGLCFDVKNLNVRATVRSDVWTNL
HCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCEEEEEECHHHHHHH
RHVEDLDKWDQYIVNIVWTKKQMREMLAKKILSYVQRKHPLSLEAKYKYDRDYNKLFQLI
HHHHHHHHHHHHHHHHEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
FISPIKWAGKEAPVFDAINAFSNHRPRSMGQLCRMASIQAHKSRCKVSLNQFNEVLTKYG
HCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHC
QNRRDDLIKEHQHQFPELENLIDSFRAGQKEYTFSELEMILDSKFIKGRDASDIPVIDGK
CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCC
PYCELIDLGHFVYKIGLISKLPDSSQKFTYYTDDPDLFYSQQNRNNDLTWTVHPSYRKYL
CHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEECCCCCCCEEEEECCCCCCEE
NING
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA