Click here to switch to the map view.

The map label for this gene is ygiQ [C]

Identifier: 167625931

GI number: 167625931

Start: 4905346

End: 4907679

Strand: Reverse

Name: ygiQ [C]

Synonym: Shal_4026

Alternate gene names: 167625931

Gene position: 4907679-4905346 (Counterclockwise)

Preceding gene: 167625932

Following gene: 167625930

Centisome position: 93.89

GC content: 49.4

Gene sequence:

>2334_bases
ATGCAAGTAGAATCCACGTTATTTACCTTTCCAAAGTATCGCCCTGAGCTCACTCGCCCAGCGCCTTTCTTACCTATGTC
TCGTAAAGAGATGGCTAAGTTAGGTTGGGATAGTTGTGACATTATTATCGTAACGGGCGATGCCTACGTGGATCATCCAA
GTTTTGGTATGGCAGTCATTGGCCGCATGCTCGAAGCCCAAGGTTTTAGAGTGGGGATTATTTCCCAGCCTGATTGGTCT
AACAAAGAAGACTTTATGAAGTTAGGCAAGCCTAACCTCTACTTTGGCGTGACTGCGGGTAACATGGACTCGATGATTAA
CCGCTATACCGCCGAGCGCCGTATGCGTCATGATGATGCCTACACCGCGGGTAATATTGGTGGTAAGCGTCCCGATCGCG
CCGTGACTGTCTACACTCAACGCTGTAAAGAAGCCTTTAAGCAAGTACCTGTAGTGATAGGTGGTATCGAGGCGAGTCTG
CGCCGCATTGCTCACTACGATTACTGGTCCGATAAAGTGCGTCGCAGTGTTGTTTTAGACGCTAAAGCCGATATCTTGAT
CTACGGCAACGCCGAACGTCCTTTAGTGGAGCTTTCTCATCGTTTGGCGGCTGGCGAGCCTATGTCACAGCTTCACGATA
TTCGTGGTACAGCGGTTATTCGTAACGAGCCGCTACCCGAATGGAAGGGGGTGGATTCGCGCAAGCTAGATCAGCTACAT
AAGATCGATCCAATTCCTAATCCGTACGGCGCCGATGATGTGGGTTGTAAAAACCTATCAGGGCCGACGGATGAGAAAAT
CTTCGACAATGATGCGCCTAAGGCTATCAGCGTCCAGCCTCCAAGACCTAAGCCTTGGGAGAAGACCTATGTCATGCTAC
CAAGCTATGAAAAGGTTTTAGAGGACAAATACCTGTATGCCCATGCCTCACGAATTTTGCATCAAGAGCAGAATCCGGGC
TGCGCGCGCGCATTATTTCAAAAGCACGCCGAACGTGCAGTTTGGGTCAATCCACCGGCTTGGCCGCTCAATACCGATGA
GATGGATGGCGTGTTCGATCTGGCATATCAGCGTGTGCCGCATCCGTCCTATGGCAAGGAGAAGATCCCTGCCTACGACA
TGATTAAGGCCTCGATTAATATTATGCGCGGTTGTTTTGGTGGCTGCTCATTCTGCTCGATCACTGAGCATGAAGGGCGG
ATCATTCAGAGTCGTTCACAAGAGTCCATTGTGAAAGAGATTAAAGATATTCAACAGAAGGTACCGGGCTTTACTGGGGT
TATCTCGGATCTGGGTGGCCCAACGGCAAACATGTACCACCTAGGCTGCACTAGCGAAAAGGCCGAGAGCACTTGCCGCC
GTCAATCTTGTATCTATCCATCGATTTGTGGTCATATGGATACCGACCATCAGCCGACCATCGACTTGTACCGCGCCGCC
CGTGATGTACCGGGGATCAAGAAGGTCTTGATCGCCTCTGGTGTGCGTTATGACTTGGCTACCGAAGATCCACGCTACGT
TAAAGAACTCGCGACTCACCATGTTGGTGGTTACCTTAAGATTGCTCCAGAGCACACAGAGGAAGGGCCGCTTAACAAGA
TGATGAAGCCGGGAATGGGCACTTACGACAAGTTTAAAACGCTTTTCGATAAGTACTCACAAGAGGCGGGTAAGAAACAG
TATTTAATTCCTTACTTTATCTCGGCGCATCCTGGTACCACTAATGAAGATATGGTGAATCTGGCGTTATGGCTCAAGGC
TGAGAAGTTTAAGCTCGATCAGGTGCAGAACTTCTACCCATCACCGATGGCGAATGCGACCACCATTTACCACACAGAGC
TTAACTCGCTTAAAAACGTTAAGCACGATAGTGAACAGGTCACTGTGCCGAAGAAAGGCCGTCAGCGTAAGCTACATAAG
GCCTTGCTGCGTTATCACGACTCGGCAGGCTGGCCGCTGATCCGTGAAGCGTTAATTGAGATGGGCAAAGAGAAATTAAT
TGGTAATGGCCCATCTTGCTTAGTCCCAGTGGAGACGCGCCAAGAGCGAGAAGCAAACAGAGCTAATAGTAAGACGTCTA
ACGCTAAAGATGATGGCAAAGGTAAGAAGGCCTTTACCCGTTTCTCTGGCGATCAATTTGATGATCGTAAATCTGGCCAG
AATAAGTCTAGTCAGAATAAGTCTGGCCAGAAAAAGTCAGGTGGTAATAAAGCGGGTCAAGGCAAGCCGGATCAAAACAG
ATCTGGCCAAGGTGCTAAAACAGGCGCTAAGCCAACAGGTAAGCGCCCTCCAAAGAAAAATGCTTGGGGCACCACGCCTA
AACACCAAAGATAG

Upstream 100 bases:

>100_bases
CTTGTAGGCGGAGCCTGTTATACTCCGCGTCCCCATTGTCAGAGTAACTTGGGGCGCGAAATCTGCGTAATTTTTGTATT
TCAGTTAGGCTGCCTAATCC

Downstream 100 bases:

>100_bases
AGCATCAAAGCTAAAAGAACGCTTGGGGCACTCAAACAAGTGCCCAAAGCAGCAGTGATAAGCTTGCTGTAGCTAAATAA
ACTAAAATAAGGGAATATCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 777; Mature: 777

Protein sequence:

>777_residues
MQVESTLFTFPKYRPELTRPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGFRVGIISQPDWS
NKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRMRHDDAYTAGNIGGKRPDRAVTVYTQRCKEAFKQVPVVIGGIEASL
RRIAHYDYWSDKVRRSVVLDAKADILIYGNAERPLVELSHRLAAGEPMSQLHDIRGTAVIRNEPLPEWKGVDSRKLDQLH
KIDPIPNPYGADDVGCKNLSGPTDEKIFDNDAPKAISVQPPRPKPWEKTYVMLPSYEKVLEDKYLYAHASRILHQEQNPG
CARALFQKHAERAVWVNPPAWPLNTDEMDGVFDLAYQRVPHPSYGKEKIPAYDMIKASINIMRGCFGGCSFCSITEHEGR
IIQSRSQESIVKEIKDIQQKVPGFTGVISDLGGPTANMYHLGCTSEKAESTCRRQSCIYPSICGHMDTDHQPTIDLYRAA
RDVPGIKKVLIASGVRYDLATEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKTLFDKYSQEAGKKQ
YLIPYFISAHPGTTNEDMVNLALWLKAEKFKLDQVQNFYPSPMANATTIYHTELNSLKNVKHDSEQVTVPKKGRQRKLHK
ALLRYHDSAGWPLIREALIEMGKEKLIGNGPSCLVPVETRQEREANRANSKTSNAKDDGKGKKAFTRFSGDQFDDRKSGQ
NKSSQNKSGQKKSGGNKAGQGKPDQNRSGQGAKTGAKPTGKRPPKKNAWGTTPKHQR

Sequences:

>Translated_777_residues
MQVESTLFTFPKYRPELTRPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGFRVGIISQPDWS
NKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRMRHDDAYTAGNIGGKRPDRAVTVYTQRCKEAFKQVPVVIGGIEASL
RRIAHYDYWSDKVRRSVVLDAKADILIYGNAERPLVELSHRLAAGEPMSQLHDIRGTAVIRNEPLPEWKGVDSRKLDQLH
KIDPIPNPYGADDVGCKNLSGPTDEKIFDNDAPKAISVQPPRPKPWEKTYVMLPSYEKVLEDKYLYAHASRILHQEQNPG
CARALFQKHAERAVWVNPPAWPLNTDEMDGVFDLAYQRVPHPSYGKEKIPAYDMIKASINIMRGCFGGCSFCSITEHEGR
IIQSRSQESIVKEIKDIQQKVPGFTGVISDLGGPTANMYHLGCTSEKAESTCRRQSCIYPSICGHMDTDHQPTIDLYRAA
RDVPGIKKVLIASGVRYDLATEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKTLFDKYSQEAGKKQ
YLIPYFISAHPGTTNEDMVNLALWLKAEKFKLDQVQNFYPSPMANATTIYHTELNSLKNVKHDSEQVTVPKKGRQRKLHK
ALLRYHDSAGWPLIREALIEMGKEKLIGNGPSCLVPVETRQEREANRANSKTSNAKDDGKGKKAFTRFSGDQFDDRKSGQ
NKSSQNKSGQKKSGGNKAGQGKPDQNRSGQGAKTGAKPTGKRPPKKNAWGTTPKHQR
>Mature_777_residues
MQVESTLFTFPKYRPELTRPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVIGRMLEAQGFRVGIISQPDWS
NKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRMRHDDAYTAGNIGGKRPDRAVTVYTQRCKEAFKQVPVVIGGIEASL
RRIAHYDYWSDKVRRSVVLDAKADILIYGNAERPLVELSHRLAAGEPMSQLHDIRGTAVIRNEPLPEWKGVDSRKLDQLH
KIDPIPNPYGADDVGCKNLSGPTDEKIFDNDAPKAISVQPPRPKPWEKTYVMLPSYEKVLEDKYLYAHASRILHQEQNPG
CARALFQKHAERAVWVNPPAWPLNTDEMDGVFDLAYQRVPHPSYGKEKIPAYDMIKASINIMRGCFGGCSFCSITEHEGR
IIQSRSQESIVKEIKDIQQKVPGFTGVISDLGGPTANMYHLGCTSEKAESTCRRQSCIYPSICGHMDTDHQPTIDLYRAA
RDVPGIKKVLIASGVRYDLATEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMGTYDKFKTLFDKYSQEAGKKQ
YLIPYFISAHPGTTNEDMVNLALWLKAEKFKLDQVQNFYPSPMANATTIYHTELNSLKNVKHDSEQVTVPKKGRQRKLHK
ALLRYHDSAGWPLIREALIEMGKEKLIGNGPSCLVPVETRQEREANRANSKTSNAKDDGKGKKAFTRFSGDQFDDRKSGQ
NKSSQNKSGQKKSGGNKAGQGKPDQNRSGQGAKTGAKPTGKRPPKKNAWGTTPKHQR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=696, Percent_Identity=71.4080459770115, Blast_Score=1061, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 87165; Mature: 87165

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVESTLFTFPKYRPELTRPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVI
CCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCEECCCCHHHHHH
GRMLEAQGFRVGIISQPDWSNKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRMRHDDA
HHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCC
YTAGNIGGKRPDRAVTVYTQRCKEAFKQVPVVIGGIEASLRRIAHYDYWSDKVRRSVVLD
CCCCCCCCCCCCCEEHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCHHHHHHHHHEEEE
AKADILIYGNAERPLVELSHRLAAGEPMSQLHDIRGTAVIRNEPLPEWKGVDSRKLDQLH
CCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
KIDPIPNPYGADDVGCKNLSGPTDEKIFDNDAPKAISVQPPRPKPWEKTYVMLPSYEKVL
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCHHHHH
EDKYLYAHASRILHQEQNPGCARALFQKHAERAVWVNPPAWPLNTDEMDGVFDLAYQRVP
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHCC
HPSYGKEKIPAYDMIKASINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQQK
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHH
VPGFTGVISDLGGPTANMYHLGCTSEKAESTCRRQSCIYPSICGHMDTDHQPTIDLYRAA
CCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHH
RDVPGIKKVLIASGVRYDLATEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMG
HCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCCC
TYDKFKTLFDKYSQEAGKKQYLIPYFISAHPGTTNEDMVNLALWLKAEKFKLDQVQNFYP
CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHEEEHHEEEHHHHHHHHHHHCCC
SPMANATTIYHTELNSLKNVKHDSEQVTVPKKGRQRKLHKALLRYHDSAGWPLIREALIE
CCCCCCEEEEEHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGKEKLIGNGPSCLVPVETRQEREANRANSKTSNAKDDGKGKKAFTRFSGDQFDDRKSGQ
HCHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCC
NKSSQNKSGQKKSGGNKAGQGKPDQNRSGQGAKTGAKPTGKRPPKKNAWGTTPKHQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQVESTLFTFPKYRPELTRPAPFLPMSRKEMAKLGWDSCDIIIVTGDAYVDHPSFGMAVI
CCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCEEEEECCCEECCCCHHHHHH
GRMLEAQGFRVGIISQPDWSNKEDFMKLGKPNLYFGVTAGNMDSMINRYTAERRMRHDDA
HHHHHCCCCEEEEECCCCCCCHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCC
YTAGNIGGKRPDRAVTVYTQRCKEAFKQVPVVIGGIEASLRRIAHYDYWSDKVRRSVVLD
CCCCCCCCCCCCCEEHHHHHHHHHHHHHCCEEEECHHHHHHHHHHCCHHHHHHHHHEEEE
AKADILIYGNAERPLVELSHRLAAGEPMSQLHDIRGTAVIRNEPLPEWKGVDSRKLDQLH
CCCCEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHH
KIDPIPNPYGADDVGCKNLSGPTDEKIFDNDAPKAISVQPPRPKPWEKTYVMLPSYEKVL
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEECCCHHHHH
EDKYLYAHASRILHQEQNPGCARALFQKHAERAVWVNPPAWPLNTDEMDGVFDLAYQRVP
HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHCC
HPSYGKEKIPAYDMIKASINIMRGCFGGCSFCSITEHEGRIIQSRSQESIVKEIKDIQQK
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCHHHHHHHHHHHHHH
VPGFTGVISDLGGPTANMYHLGCTSEKAESTCRRQSCIYPSICGHMDTDHQPTIDLYRAA
CCCHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHH
RDVPGIKKVLIASGVRYDLATEDPRYVKELATHHVGGYLKIAPEHTEEGPLNKMMKPGMG
HCCCHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHCCCCC
TYDKFKTLFDKYSQEAGKKQYLIPYFISAHPGTTNEDMVNLALWLKAEKFKLDQVQNFYP
CHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCHHHEEEHHEEEHHHHHHHHHHHCCC
SPMANATTIYHTELNSLKNVKHDSEQVTVPKKGRQRKLHKALLRYHDSAGWPLIREALIE
CCCCCCEEEEEHHHHHHHHCCCCCCEEECCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
MGKEKLIGNGPSCLVPVETRQEREANRANSKTSNAKDDGKGKKAFTRFSGDQFDDRKSGQ
HCHHHHCCCCCCEEEECCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCC
NKSSQNKSGQKKSGGNKAGQGKPDQNRSGQGAKTGAKPTGKRPPKKNAWGTTPKHQR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]