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The map label for this gene is ydiU [C]

Identifier: 167625888

GI number: 167625888

Start: 4854064

End: 4855515

Strand: Reverse

Name: ydiU [C]

Synonym: Shal_3983

Alternate gene names: 167625888

Gene position: 4855515-4854064 (Counterclockwise)

Preceding gene: 167625889

Following gene: 167625887

Centisome position: 92.89

GC content: 48.35

Gene sequence:

>1452_bases
ATGCGGTTTAAGCAAGATTTTTTCGAGCAGCTGGTTGGCTATTATTCCCAGGTTTTCCCTCAGGGAATTAGCAATCCACA
TTGGCTCGCTTGGAGTGAGGATGCGGCTGGATTAATCGGTTTGACTCAACCCACAGATGAGTTGCTTCAGGGGATGTCGG
GCAATGCTCAGATTGATGGGGCAAGCTACTATGCCCAGGTCTACAGCGGCCATCAGTTTGGCGGTTATTCACCACAACTA
GGCGATGGTCGCTCAATCATTCTAGGAGAGGCGCTAGGGCCACAAGGCACGTGGGATGTAGCGCTAAAAGGTGCTGGCCC
GACTCCCTATTCTCGCCACGGAGATGGCCGCGCGGTGATGCGCTCTGCCGTGCGTGAGTTTCTAATCTCAGAAGCCCTGC
ATCATCTGCATATTCCTACCACTCGGGCATTAGCGGTTATCGGTTCTGACGTTCCTGTATGGCGTGAGACTCAAGAGACG
GCGGCAATTACAGTTCGACTCGCTAAAAGCCATATTCGCTTTGGTCATTTTGAGTTCTTTTGCCATAGTGAGCGTGGGGC
GCCTACAAAACTAAAGCAACTACTGGATTTCACCATCAGCCAACATTATCCTGACTTAAGTTGTGATGCCGCGGGCTATA
AAGCATGGTTTGCGCGAGTGGTGACCGATACCGCTAAAATGATTGCCAATTGGCAAGCGATTGGCTTTGCCCACGGCGTG
ATGAATACCGATAATATGTCGATTCTTGGTGATACCTTTGATTTCGGCCCATTCGCCTTTTTAGATACCTTCAAAGAAGA
TTTCATCTGTAACCATTCCGATCCCGAAGGGCGTTATGCTTTCGGGCAGCAGCCAGGCATTGGTTTGTGGAATTTACAAC
GACTGGCGCAAGCGTTATCGTCCATCATCGCTTCGGATGATTTGATTGCGGCATTAAATATGTATCAAGGGGAGTTGGTA
AAACACTATCTAATTTTGATGCGTGGCAAGTTGGGATTAACGACTTCTGTAACAGAAGCCGAGCTGGACGATCAAGACTT
AGCGCTGATTGGCGGCTTTACAAGTTTGATGGAGCGCAATCAGTTAGATTATACCAATACTTGGCGACGGTTCGGCCAGT
TAGATCCTAGCTCAAGCCACTCCTCTTTACGGGACGATTTTGTTGATCGTGACGGTTTCGATGCTTGGTATCAGCTTTAT
CAAGCTAGACTCGGAAACGTTGAGGAAGTCGAGCAATGGCAAGCGGCGCGCAATCGAGCCAATCCGAAATATATTTTGCG
TAATTATTTAGCCCAAGAGGCGATAATTGGTGTCGAGGAAGGCAACTTAGCACCACTGCAGCAACTGCAACAAGTACTAC
AAAACCCGTTCGATGAACAACTCGAGTTTGACGATTTAGCTAAGCGTCCACCAGATTGGGGGCAAGGTTTAATTATGTCT
TGTAGTAGTTAA

Upstream 100 bases:

>100_bases
CGCCTAGGTGATGATATCAGTGGTCATTATGTCTGTGGTTATCAGTGTGAGGCCGATGGTCAGTCACTTAGCTGTCAAAA
TGTGATTTCCTCAAAATAGC

Downstream 100 bases:

>100_bases
ATAGCTGATGAGTGTTTGTCGATACAAATAGAATAATAAGAGTAGACTAATGTTATTAGCCTCAATTAAATTAGATCGTG
AAACCTTAAGTTTAGCAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 483

Protein sequence:

>483_residues
MRFKQDFFEQLVGYYSQVFPQGISNPHWLAWSEDAAGLIGLTQPTDELLQGMSGNAQIDGASYYAQVYSGHQFGGYSPQL
GDGRSIILGEALGPQGTWDVALKGAGPTPYSRHGDGRAVMRSAVREFLISEALHHLHIPTTRALAVIGSDVPVWRETQET
AAITVRLAKSHIRFGHFEFFCHSERGAPTKLKQLLDFTISQHYPDLSCDAAGYKAWFARVVTDTAKMIANWQAIGFAHGV
MNTDNMSILGDTFDFGPFAFLDTFKEDFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALSSIIASDDLIAALNMYQGELV
KHYLILMRGKLGLTTSVTEAELDDQDLALIGGFTSLMERNQLDYTNTWRRFGQLDPSSSHSSLRDDFVDRDGFDAWYQLY
QARLGNVEEVEQWQAARNRANPKYILRNYLAQEAIIGVEEGNLAPLQQLQQVLQNPFDEQLEFDDLAKRPPDWGQGLIMS
CSS

Sequences:

>Translated_483_residues
MRFKQDFFEQLVGYYSQVFPQGISNPHWLAWSEDAAGLIGLTQPTDELLQGMSGNAQIDGASYYAQVYSGHQFGGYSPQL
GDGRSIILGEALGPQGTWDVALKGAGPTPYSRHGDGRAVMRSAVREFLISEALHHLHIPTTRALAVIGSDVPVWRETQET
AAITVRLAKSHIRFGHFEFFCHSERGAPTKLKQLLDFTISQHYPDLSCDAAGYKAWFARVVTDTAKMIANWQAIGFAHGV
MNTDNMSILGDTFDFGPFAFLDTFKEDFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALSSIIASDDLIAALNMYQGELV
KHYLILMRGKLGLTTSVTEAELDDQDLALIGGFTSLMERNQLDYTNTWRRFGQLDPSSSHSSLRDDFVDRDGFDAWYQLY
QARLGNVEEVEQWQAARNRANPKYILRNYLAQEAIIGVEEGNLAPLQQLQQVLQNPFDEQLEFDDLAKRPPDWGQGLIMS
CSS
>Mature_483_residues
MRFKQDFFEQLVGYYSQVFPQGISNPHWLAWSEDAAGLIGLTQPTDELLQGMSGNAQIDGASYYAQVYSGHQFGGYSPQL
GDGRSIILGEALGPQGTWDVALKGAGPTPYSRHGDGRAVMRSAVREFLISEALHHLHIPTTRALAVIGSDVPVWRETQET
AAITVRLAKSHIRFGHFEFFCHSERGAPTKLKQLLDFTISQHYPDLSCDAAGYKAWFARVVTDTAKMIANWQAIGFAHGV
MNTDNMSILGDTFDFGPFAFLDTFKEDFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALSSIIASDDLIAALNMYQGELV
KHYLILMRGKLGLTTSVTEAELDDQDLALIGGFTSLMERNQLDYTNTWRRFGQLDPSSSHSSLRDDFVDRDGFDAWYQLY
QARLGNVEEVEQWQAARNRANPKYILRNYLAQEAIIGVEEGNLAPLQQLQQVLQNPFDEQLEFDDLAKRPPDWGQGLIMS
CSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=382, Percent_Identity=42.6701570680628, Blast_Score=278, Evalue=1e-74,
Organism=Escherichia coli, GI1787999, Length=489, Percent_Identity=47.6482617586912, Blast_Score=426, Evalue=1e-120,
Organism=Saccharomyces cerevisiae, GI6325034, Length=330, Percent_Identity=37.8787878787879, Blast_Score=195, Evalue=1e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3983_SHEHH (B0TKD7)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001676182.1
- GeneID:   5906757
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_3983
- HOGENOM:   HBG683993
- OMA:   FGSYNPR
- ProtClustDB:   CLSK905697
- BioCyc:   SHAL458817:SHAL_3983-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 53993; Mature: 53993

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFKQDFFEQLVGYYSQVFPQGISNPHWLAWSEDAAGLIGLTQPTDELLQGMSGNAQIDG
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHHCCCCCCEECC
ASYYAQVYSGHQFGGYSPQLGDGRSIILGEALGPQGTWDVALKGAGPTPYSRHGDGRAVM
HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHH
RSAVREFLISEALHHLHIPTTRALAVIGSDVPVWRETQETAAITVRLAKSHIRFGHFEFF
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHEEEEEHHHHHCCCCEEEE
CHSERGAPTKLKQLLDFTISQHYPDLSCDAAGYKAWFARVVTDTAKMIANWQAIGFAHGV
EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MNTDNMSILGDTFDFGPFAFLDTFKEDFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALS
CCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
SIIASDDLIAALNMYQGELVKHYLILMRGKLGLTTSVTEAELDDQDLALIGGFTSLMERN
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHC
QLDYTNTWRRFGQLDPSSSHSSLRDDFVDRDGFDAWYQLYQARLGNVEEVEQWQAARNRA
CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
NPKYILRNYLAQEAIIGVEEGNLAPLQQLQQVLQNPFDEQLEFDDLAKRPPDWGQGLIMS
CHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCHHCCCHHHHHCCCCCCCCCEEEE
CSS
CCC
>Mature Secondary Structure
MRFKQDFFEQLVGYYSQVFPQGISNPHWLAWSEDAAGLIGLTQPTDELLQGMSGNAQIDG
CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEECCCCHHHHHHCCCCCCEECC
ASYYAQVYSGHQFGGYSPQLGDGRSIILGEALGPQGTWDVALKGAGPTPYSRHGDGRAVM
HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCHHHH
RSAVREFLISEALHHLHIPTTRALAVIGSDVPVWRETQETAAITVRLAKSHIRFGHFEFF
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCHHHHEEEEEHHHHHCCCCEEEE
CHSERGAPTKLKQLLDFTISQHYPDLSCDAAGYKAWFARVVTDTAKMIANWQAIGFAHGV
EECCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
MNTDNMSILGDTFDFGPFAFLDTFKEDFICNHSDPEGRYAFGQQPGIGLWNLQRLAQALS
CCCCCCEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCHHHHHHHHHHHH
SIIASDDLIAALNMYQGELVKHYLILMRGKLGLTTSVTEAELDDQDLALIGGFTSLMERN
HHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHHC
QLDYTNTWRRFGQLDPSSSHSSLRDDFVDRDGFDAWYQLYQARLGNVEEVEQWQAARNRA
CCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCC
NPKYILRNYLAQEAIIGVEEGNLAPLQQLQQVLQNPFDEQLEFDDLAKRPPDWGQGLIMS
CHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHCCCHHCCCHHHHHCCCCCCCCCEEEE
CSS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA