| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is dnaJ [H]
Identifier: 167625672
GI number: 167625672
Start: 4576841
End: 4577755
Strand: Reverse
Name: dnaJ [H]
Synonym: Shal_3767
Alternate gene names: 167625672
Gene position: 4577755-4576841 (Counterclockwise)
Preceding gene: 167625674
Following gene: 167625671
Centisome position: 87.58
GC content: 43.17
Gene sequence:
>915_bases ATGTCTAAACAAGATTATTACAGCGTGCTAGGTGTTTCAAAGGCCTCCTCAAATCAAGAGATAAAAAAAGCCTATAAAAA GTTGGCGATGAAGTATCATCCCGATAAAAATCCTGATGATGCTACAGCTGAAGCAAAATTTAAAAATGCTAAAGAAGCGT ATGAAGTACTGACTGATACTGACAAGCGTCGCAAATATGATCAATTTGGTCATGCAGGGCTTGAAAACAACGGCCAAGGT GGGCGTCATTACAGTCAAGATGGATTTAACGACATGTTTGGTGGCGGGTTTAGTCAGCGTGAACGTGGCTTTGGTGGTCA AAGCTTTGATGGCTTTGATTTTGAAGAGATGTTTTCTCAATCAAGAGGCGGGCGTAGTCGAGCCCAAAAAGGCCAAGATA GTGAGTTTGTGTTCACTGTAGACTTTGTTGATGCAGTGCAAGGTGTTGAGAAAGTTGTTGAATTACCGGTTAATGGCGAA ACTAAAAAGATAAAGGTTAAGATCCCTGCTGGTATTAAAGACGGTGAAAAAATACGTTTCACTGGCAAAGGTAGTGCTGG AGTGAATGGTGGGGCCGCTGGTGATCTATTGCTGACCATAGCAACCCGTGAACATGCGTTTCTTGAGCGTGACAACAACG ATCTCATTTATACCGCTAGCGTCGATATGGTGATGGCGGCATTGGGTGGAGAGCTTGAAGTTAACGTATTGGATAAGCGT TTTAAGCTTAAACTGCCAGCTGGGACTCAACCGGGGCGTAAGTTCAAGATAAAGGGCAAAGGTGTTACGGATCGTAAGGG AGCGACGGGTGATTTGTTTGTGCAAATTAAAGTGGAAATCCCGCAGGATCTAACGGAACAGCAGCGTTCATTACTTGAAC AATTTAAAGCGTTAACGGAAGTGAATACACTTTAA
Upstream 100 bases:
>100_bases TTGGATTACAATAGCGGTCCAAGACAAGCTTGTTAATTTTTAGGCCATAGATAACCTCATGGCCCTTTTTTTTTGAGATA TACATTAGTGAGGGTTTAGC
Downstream 100 bases:
>100_bases ATTGGCTGAGCGCTGAGCCGTATTGTACATGAGTATAAGCTCATATCTCACCAGCCTAAATCTCAGCATTTAACCCCCCT ACTTATCGCTAAGTTGGGGG
Product: chaperone DnaJ domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MSKQDYYSVLGVSKASSNQEIKKAYKKLAMKYHPDKNPDDATAEAKFKNAKEAYEVLTDTDKRRKYDQFGHAGLENNGQG GRHYSQDGFNDMFGGGFSQRERGFGGQSFDGFDFEEMFSQSRGGRSRAQKGQDSEFVFTVDFVDAVQGVEKVVELPVNGE TKKIKVKIPAGIKDGEKIRFTGKGSAGVNGGAAGDLLLTIATREHAFLERDNNDLIYTASVDMVMAALGGELEVNVLDKR FKLKLPAGTQPGRKFKIKGKGVTDRKGATGDLFVQIKVEIPQDLTEQQRSLLEQFKALTEVNTL
Sequences:
>Translated_304_residues MSKQDYYSVLGVSKASSNQEIKKAYKKLAMKYHPDKNPDDATAEAKFKNAKEAYEVLTDTDKRRKYDQFGHAGLENNGQG GRHYSQDGFNDMFGGGFSQRERGFGGQSFDGFDFEEMFSQSRGGRSRAQKGQDSEFVFTVDFVDAVQGVEKVVELPVNGE TKKIKVKIPAGIKDGEKIRFTGKGSAGVNGGAAGDLLLTIATREHAFLERDNNDLIYTASVDMVMAALGGELEVNVLDKR FKLKLPAGTQPGRKFKIKGKGVTDRKGATGDLFVQIKVEIPQDLTEQQRSLLEQFKALTEVNTL >Mature_303_residues SKQDYYSVLGVSKASSNQEIKKAYKKLAMKYHPDKNPDDATAEAKFKNAKEAYEVLTDTDKRRKYDQFGHAGLENNGQGG RHYSQDGFNDMFGGGFSQRERGFGGQSFDGFDFEEMFSQSRGGRSRAQKGQDSEFVFTVDFVDAVQGVEKVVELPVNGET KKIKVKIPAGIKDGEKIRFTGKGSAGVNGGAAGDLLLTIATREHAFLERDNNDLIYTASVDMVMAALGGELEVNVLDKRF KLKLPAGTQPGRKFKIKGKGVTDRKGATGDLFVQIKVEIPQDLTEQQRSLLEQFKALTEVNTL
Specific function: Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion. Unfolded proteins bind initially to dnaJ; upon
COG id: COG0484
COG function: function code O; DnaJ-class molecular chaperone with C-terminal Zn finger domain
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 J domain [H]
Homologues:
Organism=Homo sapiens, GI205360838, Length=361, Percent_Identity=28.2548476454294, Blast_Score=136, Evalue=2e-32, Organism=Homo sapiens, GI205360840, Length=361, Percent_Identity=28.2548476454294, Blast_Score=136, Evalue=2e-32, Organism=Homo sapiens, GI201862518, Length=347, Percent_Identity=31.700288184438, Blast_Score=135, Evalue=3e-32, Organism=Homo sapiens, GI201862587, Length=347, Percent_Identity=31.700288184438, Blast_Score=135, Evalue=3e-32, Organism=Homo sapiens, GI56549115, Length=347, Percent_Identity=31.700288184438, Blast_Score=135, Evalue=4e-32, Organism=Homo sapiens, GI6631085, Length=332, Percent_Identity=29.2168674698795, Blast_Score=132, Evalue=3e-31, Organism=Homo sapiens, GI7706495, Length=329, Percent_Identity=29.7872340425532, Blast_Score=130, Evalue=2e-30, Organism=Homo sapiens, GI5453690, Length=336, Percent_Identity=30.3571428571429, Blast_Score=122, Evalue=3e-28, Organism=Homo sapiens, GI4504511, Length=348, Percent_Identity=31.0344827586207, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI39204547, Length=324, Percent_Identity=29.9382716049383, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI194328758, Length=292, Percent_Identity=29.4520547945205, Blast_Score=101, Evalue=9e-22, Organism=Homo sapiens, GI194328760, Length=292, Percent_Identity=28.7671232876712, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI24308127, Length=93, Percent_Identity=51.6129032258064, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI47777312, Length=117, Percent_Identity=47.8632478632479, Blast_Score=96, Evalue=3e-20, Organism=Homo sapiens, GI9558755, Length=168, Percent_Identity=38.0952380952381, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI194306642, Length=105, Percent_Identity=44.7619047619048, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI194306640, Length=105, Percent_Identity=44.7619047619048, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI29126218, Length=68, Percent_Identity=55.8823529411765, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI21553335, Length=145, Percent_Identity=40, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI27151736, Length=76, Percent_Identity=51.3157894736842, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI88501736, Length=76, Percent_Identity=51.3157894736842, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI23503241, Length=104, Percent_Identity=44.2307692307692, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI17388799, Length=66, Percent_Identity=59.0909090909091, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI4885495, Length=66, Percent_Identity=59.0909090909091, Blast_Score=83, Evalue=3e-16, Organism=Homo sapiens, GI45504382, Length=68, Percent_Identity=52.9411764705882, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI56687498, Length=69, Percent_Identity=56.5217391304348, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI72534740, Length=105, Percent_Identity=41.9047619047619, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI22749377, Length=105, Percent_Identity=39.0476190476191, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI217035105, Length=81, Percent_Identity=44.4444444444444, Blast_Score=75, Evalue=7e-14, Organism=Homo sapiens, GI5031741, Length=68, Percent_Identity=52.9411764705882, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI68077168, Length=70, Percent_Identity=48.5714285714286, Blast_Score=67, Evalue=3e-11, Organism=Homo sapiens, GI8922563, Length=68, Percent_Identity=42.6470588235294, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI68077166, Length=70, Percent_Identity=48.5714285714286, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1786197, Length=347, Percent_Identity=38.9048991354467, Blast_Score=219, Evalue=1e-58, Organism=Escherichia coli, GI1787235, Length=313, Percent_Identity=34.8242811501597, Blast_Score=171, Evalue=6e-44, Organism=Caenorhabditis elegans, GI17534355, Length=333, Percent_Identity=32.1321321321321, Blast_Score=129, Evalue=1e-30, Organism=Caenorhabditis elegans, GI212645553, Length=335, Percent_Identity=28.0597014925373, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI115532378, Length=92, Percent_Identity=51.0869565217391, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17554644, Length=99, Percent_Identity=45.4545454545455, Blast_Score=90, Evalue=1e-18, Organism=Caenorhabditis elegans, GI86563276, Length=119, Percent_Identity=41.1764705882353, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17507263, Length=63, Percent_Identity=57.1428571428571, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17553098, Length=161, Percent_Identity=39.7515527950311, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17553096, Length=161, Percent_Identity=39.7515527950311, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17538236, Length=115, Percent_Identity=39.1304347826087, Blast_Score=75, Evalue=6e-14, Organism=Caenorhabditis elegans, GI115532476, Length=86, Percent_Identity=44.1860465116279, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17568643, Length=69, Percent_Identity=50.7246376811594, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17554900, Length=67, Percent_Identity=46.2686567164179, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6324265, Length=352, Percent_Identity=31.5340909090909, Blast_Score=134, Evalue=1e-32, Organism=Saccharomyces cerevisiae, GI6322194, Length=91, Percent_Identity=48.3516483516484, Blast_Score=86, Evalue=7e-18, Organism=Saccharomyces cerevisiae, GI6320888, Length=94, Percent_Identity=46.8085106382979, Blast_Score=82, Evalue=8e-17, Organism=Saccharomyces cerevisiae, GI6323870, Length=73, Percent_Identity=47.945205479452, Blast_Score=78, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6323813, Length=139, Percent_Identity=37.410071942446, Blast_Score=73, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6323119, Length=192, Percent_Identity=33.8541666666667, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324321, Length=64, Percent_Identity=51.5625, Blast_Score=68, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6322388, Length=104, Percent_Identity=41.3461538461538, Blast_Score=68, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6324103, Length=66, Percent_Identity=51.5151515151515, Blast_Score=67, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324252, Length=64, Percent_Identity=48.4375, Blast_Score=67, Evalue=5e-12, Organism=Drosophila melanogaster, GI85726398, Length=347, Percent_Identity=30.2593659942363, Blast_Score=119, Evalue=3e-27, Organism=Drosophila melanogaster, GI19920464, Length=334, Percent_Identity=26.9461077844311, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI24658562, Length=334, Percent_Identity=28.7425149700599, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI24658555, Length=334, Percent_Identity=28.7425149700599, Blast_Score=110, Evalue=9e-25, Organism=Drosophila melanogaster, GI45552811, Length=378, Percent_Identity=26.984126984127, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI18858081, Length=347, Percent_Identity=28.8184438040346, Blast_Score=98, Evalue=8e-21, Organism=Drosophila melanogaster, GI24654066, Length=99, Percent_Identity=49.4949494949495, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24654070, Length=99, Percent_Identity=49.4949494949495, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24654068, Length=99, Percent_Identity=49.4949494949495, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24654072, Length=99, Percent_Identity=49.4949494949495, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI28574949, Length=361, Percent_Identity=25.7617728531856, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI24646562, Length=73, Percent_Identity=52.0547945205479, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24646560, Length=73, Percent_Identity=52.0547945205479, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24646558, Length=73, Percent_Identity=52.0547945205479, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI24646556, Length=73, Percent_Identity=52.0547945205479, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI21357547, Length=73, Percent_Identity=52.0547945205479, Blast_Score=83, Evalue=3e-16, Organism=Drosophila melanogaster, GI45549272, Length=76, Percent_Identity=52.6315789473684, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI45552813, Length=76, Percent_Identity=52.6315789473684, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI161077138, Length=64, Percent_Identity=56.25, Blast_Score=81, Evalue=7e-16, Organism=Drosophila melanogaster, GI17737735, Length=68, Percent_Identity=50, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24668523, Length=68, Percent_Identity=50, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI28574723, Length=68, Percent_Identity=50, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI20129487, Length=80, Percent_Identity=48.75, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24584014, Length=80, Percent_Identity=48.75, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24668492, Length=83, Percent_Identity=40.9638554216867, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI21358273, Length=67, Percent_Identity=56.7164179104478, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24651439, Length=71, Percent_Identity=46.4788732394366, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI21355911, Length=85, Percent_Identity=47.0588235294118, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24641698, Length=65, Percent_Identity=47.6923076923077, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24641696, Length=65, Percent_Identity=47.6923076923077, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI24651436, Length=71, Percent_Identity=46.4788732394366, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI21358311, Length=71, Percent_Identity=46.4788732394366, Blast_Score=71, Evalue=1e-12, Organism=Drosophila melanogaster, GI17648033, Length=120, Percent_Identity=35, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24584630, Length=120, Percent_Identity=35, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012724 - InterPro: IPR002939 - InterPro: IPR001623 - InterPro: IPR018253 - InterPro: IPR008971 - InterPro: IPR015609 - InterPro: IPR003095 - InterPro: IPR001305 [H]
Pfam domain/function: PF00226 DnaJ; PF01556 DnaJ_C; PF00684 DnaJ_CXXCXGXG [H]
EC number: NA
Molecular weight: Translated: 33530; Mature: 33399
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: PS00636 DNAJ_1 ; PS50076 DNAJ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKQDYYSVLGVSKASSNQEIKKAYKKLAMKYHPDKNPDDATAEAKFKNAKEAYEVLTDT CCCCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC DKRRKYDQFGHAGLENNGQGGRHYSQDGFNDMFGGGFSQRERGFGGQSFDGFDFEEMFSQ HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCHHHHHHH SRGGRSRAQKGQDSEFVFTVDFVDAVQGVEKVVELPVNGETKKIKVKIPAGIKDGEKIRF CCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEE TGKGSAGVNGGAAGDLLLTIATREHAFLERDNNDLIYTASVDMVMAALGGELEVNVLDKR EECCCCCCCCCCCCCEEEEEECCCCHHEECCCCCEEEECHHHHHHHHHCCCEEEEEECCE FKLKLPAGTQPGRKFKIKGKGVTDRKGATGDLFVQIKVEIPQDLTEQQRSLLEQFKALTE EEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH VNTL HCCC >Mature Secondary Structure SKQDYYSVLGVSKASSNQEIKKAYKKLAMKYHPDKNPDDATAEAKFKNAKEAYEVLTDT CCCHHHHHEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCC DKRRKYDQFGHAGLENNGQGGRHYSQDGFNDMFGGGFSQRERGFGGQSFDGFDFEEMFSQ HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCCCCCCCCCCCHHHHHHH SRGGRSRAQKGQDSEFVFTVDFVDAVQGVEKVVELPVNGETKKIKVKIPAGIKDGEKIRF CCCCHHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEE TGKGSAGVNGGAAGDLLLTIATREHAFLERDNNDLIYTASVDMVMAALGGELEVNVLDKR EECCCCCCCCCCCCCEEEEEECCCCHHEECCCCCEEEECHHHHHHHHHCCCEEEEEECCE FKLKLPAGTQPGRKFKIKGKGVTDRKGATGDLFVQIKVEIPQDLTEQQRSLLEQFKALTE EEEECCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHH VNTL HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA