| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yoaE [H]
Identifier: 167625656
GI number: 167625656
Start: 4552647
End: 4554179
Strand: Reverse
Name: yoaE [H]
Synonym: Shal_3751
Alternate gene names: 167625656
Gene position: 4554179-4552647 (Counterclockwise)
Preceding gene: 167625658
Following gene: 167625653
Centisome position: 87.13
GC content: 43.84
Gene sequence:
>1533_bases ATGGAATTTTTGCTTGAACCCCAAATTTGGATTGGTTTAATAACCCTTATTATTATCGAGATCGTACTGGGTATCGATAA CCTTGTGTTTATTGCTATTTTAGTTAAAAAGCTCCCACCAGAGCAAAGAGATAAGGCAAGAACTATCGGATTGTCTCTCG CATTGATTATGCGATTAGGCTTGCTGAGTATTGTGTCTTGGTTGGTTACACTGACCCAGCCTCTTTTCAGTATTTACGAC TTAAGCTTTTCAACTCGAGACTTGATTCTAATTACGGGTGGTCTGTTCTTGCTGTTTAAAGCGACCCATGAGCTTCATGA CCGTCTGGAAGGGGATTTACAGCAACAGCAAAATGCCAATGTGTATGCCAGTTTTGGTGTGATTATTGCCCAAATTCTGG CCCTAGATGCCGTATTCTCCTTGGATTCGATTATTACGGCTGTGGGTATGGTCGATAGCCTAACGGTGATGATGATCGCC GTCATTATCTCTATGATAGTGATGTTGCTCGCATCGAAATCGATTACCAACTTTGTCAATGCACACCCGACCGTTATCGT ATTGTGTTTAAGCTTCCTATTGATGATTGGCTTTATCTTGGTTGCAGAGGGCTTCGGATTCCATATTCCTAAAGGCTATC TGTATGCGGCAATTGGTTTCTCAATCTTGATTGAGATGTTTAATCAGATGATCACCTCAAGCCATGCTAAACATGCAGAG CGAGTGCCGCTGCGCCAGCGTACAACTGAGGCTATTTTTCGATTAATGGGTAATAAGCATTACAACATTAACGATGATGA GGGCAGTGAGCCAGCACCAGTGAGTTTTGGTGATGTCGAGCGCGACATGGTTACCGGCGTTCTGTCTCTTTCTGAGCGAA ATGTACGTACCGTCATGACGCAAAGAAAAGAGATCGTTTGGTTAAATACTGAAGATAGTACCGATAAGATTAAAGAGATT ATCAAGACTAGCCGTCACCAAATATTCCCGATTTGTCATGGCTCGCTTGATAACTTAGTCGGTATCGTACGCAGTAAAGA TCTGCTCTTTGGTATCGAAGCGGGCGAAAACTTAAGCCAAATCGCATCATCTTTTCCGGCATTTATCGTGCCTGATACGA TTAACGTTATTCGCTTACTCGATGGTTTTAGGGAGTCTCGGGCGGGTATGGCTGTGCTTGCGGACGAGTTTGGTAGCATT CAAGGTATCGTGACCCTACATGACTTACTCGAGTCTATTGTGGGCGAGTTCCCCGATATTGGTGAGATCCCAGAGATCAG TGCCTGTAATGACGGCTGGTTAGTTAAGGGGTCTACCTCACTGCATGACCTAGAGGCGCGCTTAGAAACCTTAGGCTTGA TTGATAAACAGCAGGAGTACATTACTGTTGCAGGCTTATTACTGGCCCTAAACTCAACCATTCCGAAGGTGAGCGATGTG ATTGAATTTGCAAAGCTTAAATTTGAGATTGTCGAAGCCGATGACTTCAAAGTTTCAATGGTTAAGGTGAGCTTTCTAGA GCCAGTCAGTTAG
Upstream 100 bases:
>100_bases CCAATATAAATGCACTTAATTAATTTTAATGCGTTAAATTTTAGGAGCTATTGACCGAACTGATGCATGGGCATCGGCTT TTGGAAAATGAAAATACACG
Downstream 100 bases:
>100_bases ATTTTATCTGCTAAAGAAAAAGGGCCGTATTGTACGGCCCTTTTTTTATGCGCTTATTTACAATCGATTACAGCATCACG AGGTAGGCGATAAAGATAAC
Product: integral membrane protein TerC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 510; Mature: 510
Protein sequence:
>510_residues MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLGLLSIVSWLVTLTQPLFSIYD LSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNANVYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIA VIISMIVMLLASKSITNFVNAHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMTQRKEIVWLNTEDSTDKIKEI IKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQIASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSI QGIVTLHDLLESIVGEFPDIGEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV IEFAKLKFEIVEADDFKVSMVKVSFLEPVS
Sequences:
>Translated_510_residues MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLGLLSIVSWLVTLTQPLFSIYD LSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNANVYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIA VIISMIVMLLASKSITNFVNAHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMTQRKEIVWLNTEDSTDKIKEI IKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQIASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSI QGIVTLHDLLESIVGEFPDIGEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV IEFAKLKFEIVEADDFKVSMVKVSFLEPVS >Mature_510_residues MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLGLLSIVSWLVTLTQPLFSIYD LSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNANVYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIA VIISMIVMLLASKSITNFVNAHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMTQRKEIVWLNTEDSTDKIKEI IKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQIASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSI QGIVTLHDLLESIVGEFPDIGEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV IEFAKLKFEIVEADDFKVSMVKVSFLEPVS
Specific function: Unknown
COG id: COG0861
COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
Organism=Homo sapiens, GI310128564, Length=211, Percent_Identity=24.6445497630332, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI1788119, Length=513, Percent_Identity=55.9454191033138, Blast_Score=560, Evalue=1e-161, Organism=Escherichia coli, GI87082033, Length=519, Percent_Identity=45.2793834296724, Blast_Score=409, Evalue=1e-115, Organism=Escherichia coli, GI1789197, Length=226, Percent_Identity=48.6725663716814, Blast_Score=204, Evalue=8e-54, Organism=Escherichia coli, GI1790664, Length=231, Percent_Identity=28.1385281385281, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1786879, Length=229, Percent_Identity=30.1310043668122, Blast_Score=99, Evalue=5e-22, Organism=Escherichia coli, GI145693175, Length=238, Percent_Identity=23.109243697479, Blast_Score=71, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016169 - InterPro: IPR000644 - InterPro: IPR005496 - InterPro: IPR005170 [H]
Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 56412; Mature: 56412
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LLSIVSWLVTLTQPLFSIYDLSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNAN HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC VYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIAVIISMIVMLLASKSITNFVN EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMT CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH QRKEIVWLNTEDSTDKIKEIIKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQ CCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHH IASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSIQGIVTLHDLLESIVGEFPDI HHHCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC GEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH IEFAKLKFEIVEADDFKVSMVKVSFLEPVS HHHHHHHEEEEECCCCEEEEEEEECCCCCC >Mature Secondary Structure MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLG CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH LLSIVSWLVTLTQPLFSIYDLSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNAN HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC VYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIAVIISMIVMLLASKSITNFVN EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC AHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMT CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH QRKEIVWLNTEDSTDKIKEIIKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQ CCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHH IASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSIQGIVTLHDLLESIVGEFPDI HHHCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC GEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH IEFAKLKFEIVEADDFKVSMVKVSFLEPVS HHHHHHHEEEEECCCCEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]