Definition Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession NC_010334
Length 5,226,917

Click here to switch to the map view.

The map label for this gene is yoaE [H]

Identifier: 167625656

GI number: 167625656

Start: 4552647

End: 4554179

Strand: Reverse

Name: yoaE [H]

Synonym: Shal_3751

Alternate gene names: 167625656

Gene position: 4554179-4552647 (Counterclockwise)

Preceding gene: 167625658

Following gene: 167625653

Centisome position: 87.13

GC content: 43.84

Gene sequence:

>1533_bases
ATGGAATTTTTGCTTGAACCCCAAATTTGGATTGGTTTAATAACCCTTATTATTATCGAGATCGTACTGGGTATCGATAA
CCTTGTGTTTATTGCTATTTTAGTTAAAAAGCTCCCACCAGAGCAAAGAGATAAGGCAAGAACTATCGGATTGTCTCTCG
CATTGATTATGCGATTAGGCTTGCTGAGTATTGTGTCTTGGTTGGTTACACTGACCCAGCCTCTTTTCAGTATTTACGAC
TTAAGCTTTTCAACTCGAGACTTGATTCTAATTACGGGTGGTCTGTTCTTGCTGTTTAAAGCGACCCATGAGCTTCATGA
CCGTCTGGAAGGGGATTTACAGCAACAGCAAAATGCCAATGTGTATGCCAGTTTTGGTGTGATTATTGCCCAAATTCTGG
CCCTAGATGCCGTATTCTCCTTGGATTCGATTATTACGGCTGTGGGTATGGTCGATAGCCTAACGGTGATGATGATCGCC
GTCATTATCTCTATGATAGTGATGTTGCTCGCATCGAAATCGATTACCAACTTTGTCAATGCACACCCGACCGTTATCGT
ATTGTGTTTAAGCTTCCTATTGATGATTGGCTTTATCTTGGTTGCAGAGGGCTTCGGATTCCATATTCCTAAAGGCTATC
TGTATGCGGCAATTGGTTTCTCAATCTTGATTGAGATGTTTAATCAGATGATCACCTCAAGCCATGCTAAACATGCAGAG
CGAGTGCCGCTGCGCCAGCGTACAACTGAGGCTATTTTTCGATTAATGGGTAATAAGCATTACAACATTAACGATGATGA
GGGCAGTGAGCCAGCACCAGTGAGTTTTGGTGATGTCGAGCGCGACATGGTTACCGGCGTTCTGTCTCTTTCTGAGCGAA
ATGTACGTACCGTCATGACGCAAAGAAAAGAGATCGTTTGGTTAAATACTGAAGATAGTACCGATAAGATTAAAGAGATT
ATCAAGACTAGCCGTCACCAAATATTCCCGATTTGTCATGGCTCGCTTGATAACTTAGTCGGTATCGTACGCAGTAAAGA
TCTGCTCTTTGGTATCGAAGCGGGCGAAAACTTAAGCCAAATCGCATCATCTTTTCCGGCATTTATCGTGCCTGATACGA
TTAACGTTATTCGCTTACTCGATGGTTTTAGGGAGTCTCGGGCGGGTATGGCTGTGCTTGCGGACGAGTTTGGTAGCATT
CAAGGTATCGTGACCCTACATGACTTACTCGAGTCTATTGTGGGCGAGTTCCCCGATATTGGTGAGATCCCAGAGATCAG
TGCCTGTAATGACGGCTGGTTAGTTAAGGGGTCTACCTCACTGCATGACCTAGAGGCGCGCTTAGAAACCTTAGGCTTGA
TTGATAAACAGCAGGAGTACATTACTGTTGCAGGCTTATTACTGGCCCTAAACTCAACCATTCCGAAGGTGAGCGATGTG
ATTGAATTTGCAAAGCTTAAATTTGAGATTGTCGAAGCCGATGACTTCAAAGTTTCAATGGTTAAGGTGAGCTTTCTAGA
GCCAGTCAGTTAG

Upstream 100 bases:

>100_bases
CCAATATAAATGCACTTAATTAATTTTAATGCGTTAAATTTTAGGAGCTATTGACCGAACTGATGCATGGGCATCGGCTT
TTGGAAAATGAAAATACACG

Downstream 100 bases:

>100_bases
ATTTTATCTGCTAAAGAAAAAGGGCCGTATTGTACGGCCCTTTTTTTATGCGCTTATTTACAATCGATTACAGCATCACG
AGGTAGGCGATAAAGATAAC

Product: integral membrane protein TerC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 510; Mature: 510

Protein sequence:

>510_residues
MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLGLLSIVSWLVTLTQPLFSIYD
LSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNANVYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIA
VIISMIVMLLASKSITNFVNAHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE
RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMTQRKEIVWLNTEDSTDKIKEI
IKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQIASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSI
QGIVTLHDLLESIVGEFPDIGEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV
IEFAKLKFEIVEADDFKVSMVKVSFLEPVS

Sequences:

>Translated_510_residues
MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLGLLSIVSWLVTLTQPLFSIYD
LSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNANVYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIA
VIISMIVMLLASKSITNFVNAHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE
RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMTQRKEIVWLNTEDSTDKIKEI
IKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQIASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSI
QGIVTLHDLLESIVGEFPDIGEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV
IEFAKLKFEIVEADDFKVSMVKVSFLEPVS
>Mature_510_residues
MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLGLLSIVSWLVTLTQPLFSIYD
LSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNANVYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIA
VIISMIVMLLASKSITNFVNAHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE
RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMTQRKEIVWLNTEDSTDKIKEI
IKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQIASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSI
QGIVTLHDLLESIVGEFPDIGEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV
IEFAKLKFEIVEADDFKVSMVKVSFLEPVS

Specific function: Unknown

COG id: COG0861

COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 CBS domains [H]

Homologues:

Organism=Homo sapiens, GI310128564, Length=211, Percent_Identity=24.6445497630332, Blast_Score=67, Evalue=6e-11,
Organism=Escherichia coli, GI1788119, Length=513, Percent_Identity=55.9454191033138, Blast_Score=560, Evalue=1e-161,
Organism=Escherichia coli, GI87082033, Length=519, Percent_Identity=45.2793834296724, Blast_Score=409, Evalue=1e-115,
Organism=Escherichia coli, GI1789197, Length=226, Percent_Identity=48.6725663716814, Blast_Score=204, Evalue=8e-54,
Organism=Escherichia coli, GI1790664, Length=231, Percent_Identity=28.1385281385281, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786879, Length=229, Percent_Identity=30.1310043668122, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI145693175, Length=238, Percent_Identity=23.109243697479, Blast_Score=71, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016169
- InterPro:   IPR000644
- InterPro:   IPR005496
- InterPro:   IPR005170 [H]

Pfam domain/function: PF00571 CBS; PF03471 CorC_HlyC; PF03741 TerC [H]

EC number: NA

Molecular weight: Translated: 56412; Mature: 56412

Theoretical pI: Translated: 4.71; Mature: 4.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLSIVSWLVTLTQPLFSIYDLSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNAN
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC
VYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIAVIISMIVMLLASKSITNFVN
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMT
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
QRKEIVWLNTEDSTDKIKEIIKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQ
CCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHH
IASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSIQGIVTLHDLLESIVGEFPDI
HHHCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
GEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
IEFAKLKFEIVEADDFKVSMVKVSFLEPVS
HHHHHHHEEEEECCCCEEEEEEEECCCCCC
>Mature Secondary Structure
MEFLLEPQIWIGLITLIIIEIVLGIDNLVFIAILVKKLPPEQRDKARTIGLSLALIMRLG
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
LLSIVSWLVTLTQPLFSIYDLSFSTRDLILITGGLFLLFKATHELHDRLEGDLQQQQNAN
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCC
VYASFGVIIAQILALDAVFSLDSIITAVGMVDSLTVMMIAVIISMIVMLLASKSITNFVN
EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
AHPTVIVLCLSFLLMIGFILVAEGFGFHIPKGYLYAAIGFSILIEMFNQMITSSHAKHAE
CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RVPLRQRTTEAIFRLMGNKHYNINDDEGSEPAPVSFGDVERDMVTGVLSLSERNVRTVMT
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
QRKEIVWLNTEDSTDKIKEIIKTSRHQIFPICHGSLDNLVGIVRSKDLLFGIEAGENLSQ
CCCEEEEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCCHHH
IASSFPAFIVPDTINVIRLLDGFRESRAGMAVLADEFGSIQGIVTLHDLLESIVGEFPDI
HHHCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCC
GEIPEISACNDGWLVKGSTSLHDLEARLETLGLIDKQQEYITVAGLLLALNSTIPKVSDV
CCCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHH
IEFAKLKFEIVEADDFKVSMVKVSFLEPVS
HHHHHHHEEEEECCCCEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]