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The map label for this gene is rhaS [C]

Identifier: 167625647

GI number: 167625647

Start: 4540709

End: 4541590

Strand: Reverse

Name: rhaS [C]

Synonym: Shal_3742

Alternate gene names: 167625647

Gene position: 4541590-4540709 (Counterclockwise)

Preceding gene: 167625648

Following gene: 167625646

Centisome position: 86.89

GC content: 40.7

Gene sequence:

>882_bases
ATGAAAAGTGTCCCGAGTGTTGATTTTAGAGCCCCAAATATCCATAAAGCGGGTGTCGAAATATTAGATTTAGAGTTGTT
TTATACCAAGCTATCTAAGTGTAACTTTTGCCCCTCAAAGCCCCACCGCATTAACTACTTTTGCTTTATTTATGTTACTG
AAGGGCAAGGCGGTCATTTTGTTGATTTTAAGTATCATCAGTTTAAACCAGGGAGCTTTGTTTTTGTCAATAAACATCAA
GTACATGCTTTCGATTTAATGAGTCGCCCAAAAGGTAAAATGATCAATATTACCGAAGACTTCTTAAATACTATTTTAGC
CAATATGCGGATTCCCTTTTTCACACCAACTCACCTAGTGAGTTCTCAGCAGCCGCTTTTGACTCTTAGCTCATCGCTGG
TAGAGACTTGCGATAGTCTACTGCTTGAGATCAATAAGGCACAGGAGAGCGAAGCGGAAACACAGTTACTCGTGCAGCTT
TTATTTTCGTCATTGCTGGTAGCCTTGGCGACGGAAAGAGAAACCGATGCACAGCATTTAAGTGAAGCTCAGGCATACCG
TTTTCAGCAATTTTTATTGTTGATAGAGAGTAATGCGGCTCATACTCGTGATGCATCAGGTTATGCAGAGATGCTGCATA
TCTCTTATAAATCGCTCAATCAAATGTGTAAGCAAGCGAGCGGGCAAACGGCTAAGCAGTTGATTGATGCCCATGCCATT
CTGGAGATAAAGCGCAGATTAATTATCGGTAGCGCTAAAATTCAAGAAATTGCTTATGAGTTAGGTTTCGATGATGTGAC
CTACTTCGTGAAGTTTTTTAAGCGTCACACCCAGCTGACTCCCTCTCAATTTAAAGACAATGCAGTCACAGCTTTATCTT
AA

Upstream 100 bases:

>100_bases
GGCATTAGATAGTTCACTAAAGTAGTTATTAGCGTTTTATCCCTAAAGTTTGCCTTGGCATGTTAGCGTGGCTTGAAAGG
GAACTGATGGCAAGAGATAG

Downstream 100 bases:

>100_bases
GCGTTATCTTCACATCATTTGATGACTTAGTGATGCTGATAGATAAAAAGCCATCAAGCTCACATTGTTGTCACTAGGTA
CGAAAAACACCATTTTGTGG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator Arac Family; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator AraC Family Protein; AraC Protein; Transcriptional Regulatory Protein AraC-Type; AraC Family Transcription Regulator Protein; Regulatory Helix-Turn-Helix Protein AraC Family; Helix-Turn-Helix AraC Domain Protein; AraC/XylS Family Transcription Factor

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKSVPSVDFRAPNIHKAGVEILDLELFYTKLSKCNFCPSKPHRINYFCFIYVTEGQGGHFVDFKYHQFKPGSFVFVNKHQ
VHAFDLMSRPKGKMINITEDFLNTILANMRIPFFTPTHLVSSQQPLLTLSSSLVETCDSLLLEINKAQESEAETQLLVQL
LFSSLLVALATERETDAQHLSEAQAYRFQQFLLLIESNAAHTRDASGYAEMLHISYKSLNQMCKQASGQTAKQLIDAHAI
LEIKRRLIIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFKDNAVTALS

Sequences:

>Translated_293_residues
MKSVPSVDFRAPNIHKAGVEILDLELFYTKLSKCNFCPSKPHRINYFCFIYVTEGQGGHFVDFKYHQFKPGSFVFVNKHQ
VHAFDLMSRPKGKMINITEDFLNTILANMRIPFFTPTHLVSSQQPLLTLSSSLVETCDSLLLEINKAQESEAETQLLVQL
LFSSLLVALATERETDAQHLSEAQAYRFQQFLLLIESNAAHTRDASGYAEMLHISYKSLNQMCKQASGQTAKQLIDAHAI
LEIKRRLIIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFKDNAVTALS
>Mature_293_residues
MKSVPSVDFRAPNIHKAGVEILDLELFYTKLSKCNFCPSKPHRINYFCFIYVTEGQGGHFVDFKYHQFKPGSFVFVNKHQ
VHAFDLMSRPKGKMINITEDFLNTILANMRIPFFTPTHLVSSQQPLLTLSSSLVETCDSLLLEINKAQESEAETQLLVQL
LFSSLLVALATERETDAQHLSEAQAYRFQQFLLLIESNAAHTRDASGYAEMLHISYKSLNQMCKQASGQTAKQLIDAHAI
LEIKRRLIIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFKDNAVTALS

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 33293; Mature: 33293

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSVPSVDFRAPNIHKAGVEILDLELFYTKLSKCNFCPSKPHRINYFCFIYVTEGQGGHF
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEE
VDFKYHQFKPGSFVFVNKHQVHAFDLMSRPKGKMINITEDFLNTILANMRIPFFTPTHLV
EEEEEEEECCCCEEEEECCCEEHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHH
SSQQPLLTLSSSLVETCDSLLLEINKAQESEAETQLLVQLLFSSLLVALATERETDAQHL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SEAQAYRFQQFLLLIESNAAHTRDASGYAEMLHISYKSLNQMCKQASGQTAKQLIDAHAI
HHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEIKRRLIIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFKDNAVTALS
HHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCC
>Mature Secondary Structure
MKSVPSVDFRAPNIHKAGVEILDLELFYTKLSKCNFCPSKPHRINYFCFIYVTEGQGGHF
CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCEEEEEEEEEEEECCCCEE
VDFKYHQFKPGSFVFVNKHQVHAFDLMSRPKGKMINITEDFLNTILANMRIPFFTPTHLV
EEEEEEEECCCCEEEEECCCEEHHHHHCCCCCCEEEEHHHHHHHHHHHCCCCCCCHHHHH
SSQQPLLTLSSSLVETCDSLLLEINKAQESEAETQLLVQLLFSSLLVALATERETDAQHL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SEAQAYRFQQFLLLIESNAAHTRDASGYAEMLHISYKSLNQMCKQASGQTAKQLIDAHAI
HHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
LEIKRRLIIGSAKIQEIAYELGFDDVTYFVKFFKRHTQLTPSQFKDNAVTALS
HHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA