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The map label for this gene is ybeF [C]

Identifier: 167625572

GI number: 167625572

Start: 4464956

End: 4465933

Strand: Reverse

Name: ybeF [C]

Synonym: Shal_3666

Alternate gene names: 167625572

Gene position: 4465933-4464956 (Counterclockwise)

Preceding gene: 167625574

Following gene: 167625571

Centisome position: 85.44

GC content: 39.78

Gene sequence:

>978_bases
ATGAGCAAGTTAAGCGTTAATAGTCTATTTGATATTCAAGTCTTTGTTTTATTGTATGAGTCACTCAATGCGACAGCCGT
TAGCCAAACTTTAGGTGTGCCGAGCTCTAAAATCAGCCGGAGCCTTAAGTCGTTGAGGCACTCTTTGAATGCGCCGCTGT
TTATTCGTAAACAACAAGGGTTTGAGACCAGTGATTTGGCAAACGATATTTATCCCAAAATGAAGCGTATCGTTGAGCTT
GCTAAACACTGTGAAAAGATCCAAGTGGGTACGGATAACTTGCGAACCCGTAAGCTGGTGATTGCTTGCCCACCGACATT
ATCGTTAAACCTGCTTAATCATTTACAAGCTAGGGCCCATGAAGAGCAAGACTCTTTTCTCTTTCACATTAAGCCTTGCA
CTAGCAATGTGGCTGAGCTTATAAAGCAGCAACATGTTGATATTGCGGTAACTTATGGTGCTTATAATACTGAACAATTG
ACTTCAAGTTTAATTGTAACATCAAGTAACTATGTGCTGGTTGCTAAACAAGGCCATCCATTATTGAGCCACCAACAGCC
ATTGGGGCTTGATGATATATTTGATTATCCATACATAAGTTTTTCAGGTAATGAGATCAACGATGTGATTGATCCGCTGG
AGTGCTATGCCTTAGATGTCGAACGCAAATTGAAGTTAGTTGTGAAAGTTTGTTTTTTAGCGGATCTCATGCTGCAGTTA
GAGCAGAGTGATGCAATTGCGCTTTTAAGCCATATGGATGCCGTTGAGTTTTTATGTCAACGAGGCAATATTGGTGCATT
AAAATTAGAGAAAAGCTTATGTGAATCGATTAATCAAAGAAGTGGTTGCGACCATTATTATTTGACACAGATGCGTAAGA
ACACAACTTCCCCTAGCTGGATAGGCGAGGAGATTCATCGTTATATTCAAGCAAATATAACCTCAGATAGTGAAGGCTAT
AATGAAGATATTAAGTAG

Upstream 100 bases:

>100_bases
AATAATATGAAAATCACGAAAGTAAAGGCTATTTATACGTAATGCATCGTGAATGGTTTAGATTGCTTAATTAGGGATTA
GCACATTACTTTGAGGGAAA

Downstream 100 bases:

>100_bases
CGTTAGTCTTTCTAGCATAGAAATATTTTGCCAACTTTATATTAAAAATAGTACCAAAGAAGTGGCTCTTACACTGGGGA
CCTCACAGCCTAAGGTGAGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator-Like Protein; Regulatory Protein LysR; Transcriptional Regulator LysR Family

Number of amino acids: Translated: 325; Mature: 324

Protein sequence:

>325_residues
MSKLSVNSLFDIQVFVLLYESLNATAVSQTLGVPSSKISRSLKSLRHSLNAPLFIRKQQGFETSDLANDIYPKMKRIVEL
AKHCEKIQVGTDNLRTRKLVIACPPTLSLNLLNHLQARAHEEQDSFLFHIKPCTSNVAELIKQQHVDIAVTYGAYNTEQL
TSSLIVTSSNYVLVAKQGHPLLSHQQPLGLDDIFDYPYISFSGNEINDVIDPLECYALDVERKLKLVVKVCFLADLMLQL
EQSDAIALLSHMDAVEFLCQRGNIGALKLEKSLCESINQRSGCDHYYLTQMRKNTTSPSWIGEEIHRYIQANITSDSEGY
NEDIK

Sequences:

>Translated_325_residues
MSKLSVNSLFDIQVFVLLYESLNATAVSQTLGVPSSKISRSLKSLRHSLNAPLFIRKQQGFETSDLANDIYPKMKRIVEL
AKHCEKIQVGTDNLRTRKLVIACPPTLSLNLLNHLQARAHEEQDSFLFHIKPCTSNVAELIKQQHVDIAVTYGAYNTEQL
TSSLIVTSSNYVLVAKQGHPLLSHQQPLGLDDIFDYPYISFSGNEINDVIDPLECYALDVERKLKLVVKVCFLADLMLQL
EQSDAIALLSHMDAVEFLCQRGNIGALKLEKSLCESINQRSGCDHYYLTQMRKNTTSPSWIGEEIHRYIQANITSDSEGY
NEDIK
>Mature_324_residues
SKLSVNSLFDIQVFVLLYESLNATAVSQTLGVPSSKISRSLKSLRHSLNAPLFIRKQQGFETSDLANDIYPKMKRIVELA
KHCEKIQVGTDNLRTRKLVIACPPTLSLNLLNHLQARAHEEQDSFLFHIKPCTSNVAELIKQQHVDIAVTYGAYNTEQLT
SSLIVTSSNYVLVAKQGHPLLSHQQPLGLDDIFDYPYISFSGNEINDVIDPLECYALDVERKLKLVVKVCFLADLMLQLE
QSDAIALLSHMDAVEFLCQRGNIGALKLEKSLCESINQRSGCDHYYLTQMRKNTTSPSWIGEEIHRYIQANITSDSEGYN
EDIK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36603; Mature: 36472

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLSVNSLFDIQVFVLLYESLNATAVSQTLGVPSSKISRSLKSLRHSLNAPLFIRKQQG
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCC
FETSDLANDIYPKMKRIVELAKHCEKIQVGTDNLRTRKLVIACPPTLSLNLLNHLQARAH
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC
EEQDSFLFHIKPCTSNVAELIKQQHVDIAVTYGAYNTEQLTSSLIVTSSNYVLVAKQGHP
CCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHEEECCCEEEEEECCCC
LLSHQQPLGLDDIFDYPYISFSGNEINDVIDPLECYALDVERKLKLVVKVCFLADLMLQL
CCCCCCCCCCHHHCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQSDAIALLSHMDAVEFLCQRGNIGALKLEKSLCESINQRSGCDHYYLTQMRKNTTSPSW
HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHH
IGEEIHRYIQANITSDSEGYNEDIK
HHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SKLSVNSLFDIQVFVLLYESLNATAVSQTLGVPSSKISRSLKSLRHSLNAPLFIRKQQG
CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEECCC
FETSDLANDIYPKMKRIVELAKHCEKIQVGTDNLRTRKLVIACPPTLSLNLLNHLQARAH
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHCC
EEQDSFLFHIKPCTSNVAELIKQQHVDIAVTYGAYNTEQLTSSLIVTSSNYVLVAKQGHP
CCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHEEECCCEEEEEECCCC
LLSHQQPLGLDDIFDYPYISFSGNEINDVIDPLECYALDVERKLKLVVKVCFLADLMLQL
CCCCCCCCCCHHHCCCCEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EQSDAIALLSHMDAVEFLCQRGNIGALKLEKSLCESINQRSGCDHYYLTQMRKNTTSPSW
HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHH
IGEEIHRYIQANITSDSEGYNEDIK
HHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA