| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is tolQ [C]
Identifier: 167625524
GI number: 167625524
Start: 4413931
End: 4415388
Strand: Reverse
Name: tolQ [C]
Synonym: Shal_3618
Alternate gene names: 167625524
Gene position: 4415388-4413931 (Counterclockwise)
Preceding gene: 167625525
Following gene: 167625523
Centisome position: 84.47
GC content: 48.15
Gene sequence:
>1458_bases ATGAGAGCAGTGATTTTAGTCTTGTTGTTATGCGTATCGACATTGGGCTTTGCACAAAAGTCAGCTACACAAGAGACAGC TTCTGTAAAAGGATCTGCAGAATATCAAGCTCTTGAGCGGCGAGTTGACCAGCGAGCCTCTGAGGTAGAGCGACAAAACT TGCTTTGGAGCAGCAACTTAAAGCAAGAGATCGATGAAGTTAAAACTAATCAGCAGCAGTTGACTAAGCGTTTAAAGACT AAGCGTGGTCAACTTGAGCAATTGAATCAACAGCTGATTGATTTAAATCAGCAAAAGCAAAGTCTCAGCCAAGATTATCA GCTTGCTGTTGATGATATGAAGCTGGTTCAAGGCGCCTATCAAAAAGCACTGAGTAGCCTATCGCAACAGTGGCAGCAGA GTCCTACTCAGTTTGCTGCGCCTCAACGGCTGGAAAACTTAACGCTTGCCAAGGCGAGTTTGGGATTCCCAAGCTTGACC CAGCTTAATGAGCTTGTCGGCTACGCTGTCGATGATATGCAGATGACGGCGAAAGTGCTAACAGCCAAGGCGCCGATTAG CTTGGGTGATGGCAGCGTAACGGAGCAAGAGTTACAGGTATTTGGCGGCTTAATGGCGGTGACTAATAATGAACAGCCAA GCTTTATCGCCTTTACAGAAAAACTACCCATTGCCATATCACCTGTCGATTCACAGATCAGTGAGCAACTAAAGTCTTGG CTTGATAAGCAGGCTCAGCTATTGCCGCTGGATTTAAGTCAAGGACGAATGCTGCCAAGTCTGGCAGAGAAACAGAGCCT GACAGAGTGGGTCGAAAACGGCGGAGAGGTGCTATGGCCGATCCTTATCTTAGCCGCGTTGGGATTAGTGGTAGCGCTAT GGCGGGCAGTAATGCTGTTTTACTGGCGCCCGCTAGCTCAGCTTAGTGACAAGGATGGCACTCAAGTTGACCTGCAAGCT ATTAAGCTGCAACTTTCAAATATGACAAGGGTGCCAGCGGCCAGCGTACTCGCTAATGCAATCACTAGCTCAAGCACTCA TTCAAGCACTAACTCAAGCACTAACTCAAACAACCGAGATGGTGGTGTCGAGGCGATGGATCAACGACTGAAGCAATTGA TGCTAAAGCAGATGGCACAGTTTGAACGCGGGCTTGGCTTTATTGCACTGCTGGCGGCAATGGCTCCGATGCTGGGGTTA CTCGGCACCGTATCTGGCATGATTGAAACTTTTCAGTCTTTAACGGAGTTTGGTAATAGCGATCCTAAGTTGTTATCTGA GGGGATCAGTAAGGCTTTGATCACCACTCAAGCGGGATTGCTGGTGGCGCTACCTTTGCTATTACTACATTACCCACTTA AACGCCGTGCTCAGGCGCTTAGCTTGAATATGGAGCAGCAATCAGCCCTGTTACTCGCCCTTAATCTTGAGCGAGGTGGC GAGTATGTCACTCGATAG
Upstream 100 bases:
>100_bases TACCTGTCAATGAGCAAGGAGACTTAAGGTTAGCGATGGCAATAACGTCGAATAAACAGGTTGCCCAGATAGTTAACCTG CCATTAGGAGCGCAACAATA
Downstream 100 bases:
>100_bases CTTACTGTTTTCTGTCCGGCAGTTTGGTCATGCCATTCTTGGCTTTATTGAGCTGGGTGGAGTGGTGATGTGGCCGCTGT TTGCTTGCTGCCTATGGATG
Product: MotA/TolQ/ExbB proton channel
Products: NA
Alternate protein names: Transport Protein lQ; Biopolymer Transport Proteins-Like; Outer Membrane Transport Energization Protein ExbB
Number of amino acids: Translated: 485; Mature: 485
Protein sequence:
>485_residues MRAVILVLLLCVSTLGFAQKSATQETASVKGSAEYQALERRVDQRASEVERQNLLWSSNLKQEIDEVKTNQQQLTKRLKT KRGQLEQLNQQLIDLNQQKQSLSQDYQLAVDDMKLVQGAYQKALSSLSQQWQQSPTQFAAPQRLENLTLAKASLGFPSLT QLNELVGYAVDDMQMTAKVLTAKAPISLGDGSVTEQELQVFGGLMAVTNNEQPSFIAFTEKLPIAISPVDSQISEQLKSW LDKQAQLLPLDLSQGRMLPSLAEKQSLTEWVENGGEVLWPILILAALGLVVALWRAVMLFYWRPLAQLSDKDGTQVDLQA IKLQLSNMTRVPAASVLANAITSSSTHSSTNSSTNSNNRDGGVEAMDQRLKQLMLKQMAQFERGLGFIALLAAMAPMLGL LGTVSGMIETFQSLTEFGNSDPKLLSEGISKALITTQAGLLVALPLLLLHYPLKRRAQALSLNMEQQSALLLALNLERGG EYVTR
Sequences:
>Translated_485_residues MRAVILVLLLCVSTLGFAQKSATQETASVKGSAEYQALERRVDQRASEVERQNLLWSSNLKQEIDEVKTNQQQLTKRLKT KRGQLEQLNQQLIDLNQQKQSLSQDYQLAVDDMKLVQGAYQKALSSLSQQWQQSPTQFAAPQRLENLTLAKASLGFPSLT QLNELVGYAVDDMQMTAKVLTAKAPISLGDGSVTEQELQVFGGLMAVTNNEQPSFIAFTEKLPIAISPVDSQISEQLKSW LDKQAQLLPLDLSQGRMLPSLAEKQSLTEWVENGGEVLWPILILAALGLVVALWRAVMLFYWRPLAQLSDKDGTQVDLQA IKLQLSNMTRVPAASVLANAITSSSTHSSTNSSTNSNNRDGGVEAMDQRLKQLMLKQMAQFERGLGFIALLAAMAPMLGL LGTVSGMIETFQSLTEFGNSDPKLLSEGISKALITTQAGLLVALPLLLLHYPLKRRAQALSLNMEQQSALLLALNLERGG EYVTR >Mature_485_residues MRAVILVLLLCVSTLGFAQKSATQETASVKGSAEYQALERRVDQRASEVERQNLLWSSNLKQEIDEVKTNQQQLTKRLKT KRGQLEQLNQQLIDLNQQKQSLSQDYQLAVDDMKLVQGAYQKALSSLSQQWQQSPTQFAAPQRLENLTLAKASLGFPSLT QLNELVGYAVDDMQMTAKVLTAKAPISLGDGSVTEQELQVFGGLMAVTNNEQPSFIAFTEKLPIAISPVDSQISEQLKSW LDKQAQLLPLDLSQGRMLPSLAEKQSLTEWVENGGEVLWPILILAALGLVVALWRAVMLFYWRPLAQLSDKDGTQVDLQA IKLQLSNMTRVPAASVLANAITSSSTHSSTNSSTNSNNRDGGVEAMDQRLKQLMLKQMAQFERGLGFIALLAAMAPMLGL LGTVSGMIETFQSLTEFGNSDPKLLSEGISKALITTQAGLLVALPLLLLHYPLKRRAQALSLNMEQQSALLLALNLERGG EYVTR
Specific function: Involved In The Tonb-Independent Uptake Of Group A Colicins (Colicins A, E1, E2, E3, And K). [C]
COG id: COG0811
COG function: function code U; Biopolymer transport proteins
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1786958, Length=121, Percent_Identity=28.9256198347107, Blast_Score=62, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53308; Mature: 53308
Theoretical pI: Translated: 6.00; Mature: 6.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAVILVLLLCVSTLGFAQKSATQETASVKGSAEYQALERRVDQRASEVERQNLLWSSNL CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQEIDEVKTNQQQLTKRLKTKRGQLEQLNQQLIDLNQQKQSLSQDYQLAVDDMKLVQGAY HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKALSSLSQQWQQSPTQFAAPQRLENLTLAKASLGFPSLTQLNELVGYAVDDMQMTAKVL HHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH TAKAPISLGDGSVTEQELQVFGGLMAVTNNEQPSFIAFTEKLPIAISPVDSQISEQLKSW HHCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEEECCCCEEECCCHHHHHHHHHHH LDKQAQLLPLDLSQGRMLPSLAEKQSLTEWVENGGEVLWPILILAALGLVVALWRAVMLF HHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH YWRPLAQLSDKDGTQVDLQAIKLQLSNMTRVPAASVLANAITSSSTHSSTNSSTNSNNRD HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC GGVEAMDQRLKQLMLKQMAQFERGLGFIALLAAMAPMLGLLGTVSGMIETFQSLTEFGNS CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DPKLLSEGISKALITTQAGLLVALPLLLLHYPLKRRAQALSLNMEQQSALLLALNLERGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCEEEEEECCCCC EYVTR CCCCC >Mature Secondary Structure MRAVILVLLLCVSTLGFAQKSATQETASVKGSAEYQALERRVDQRASEVERQNLLWSSNL CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQEIDEVKTNQQQLTKRLKTKRGQLEQLNQQLIDLNQQKQSLSQDYQLAVDDMKLVQGAY HHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH QKALSSLSQQWQQSPTQFAAPQRLENLTLAKASLGFPSLTQLNELVGYAVDDMQMTAKVL HHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH TAKAPISLGDGSVTEQELQVFGGLMAVTNNEQPSFIAFTEKLPIAISPVDSQISEQLKSW HHCCCCCCCCCCCCHHHHHHHHHHHEEECCCCCCEEEEECCCCEEECCCHHHHHHHHHHH LDKQAQLLPLDLSQGRMLPSLAEKQSLTEWVENGGEVLWPILILAALGLVVALWRAVMLF HHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH YWRPLAQLSDKDGTQVDLQAIKLQLSNMTRVPAASVLANAITSSSTHSSTNSSTNSNNRD HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCC GGVEAMDQRLKQLMLKQMAQFERGLGFIALLAAMAPMLGLLGTVSGMIETFQSLTEFGNS CCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC DPKLLSEGISKALITTQAGLLVALPLLLLHYPLKRRAQALSLNMEQQSALLLALNLERGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHCCEEEEEECCCCC EYVTR CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA