| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is dbpA [H]
Identifier: 167625498
GI number: 167625498
Start: 4385282
End: 4386691
Strand: Reverse
Name: dbpA [H]
Synonym: Shal_3592
Alternate gene names: 167625498
Gene position: 4386691-4385282 (Counterclockwise)
Preceding gene: 167625499
Following gene: 167625496
Centisome position: 83.93
GC content: 45.74
Gene sequence:
>1410_bases TTGACTCAATCAGTCCCAAATACCGATGGCCAAGCGCCATTCTCAAGCCTTAACCTTAAGGTTGAGTTACTCGATAACCT AAAAACGATGGGTTATGAGTCGATGACGCCTATTCAGGCGCAAAGCTTACCTGCCATTCTTAATGGCGAAGATGTGATTG GCCAAGGAAAGACGGGCTCGGGTAAGACGGCAGCGTTCGGTTTGGGCTTACTGAACAAATTAGACGTTAAACGTTTTCGT ATTCAGACTTTGGTTTTGTGCCCGACCCGTGAACTTGCCGATCAAGTGGCAAAAGAGATCCGCACGCTTGCTCGTGGCAT CCATAACATTAAAGTGCTGACTCTTTGTGGCGGTGTGCCAATGGGTCCACAAATTGGCTCGTTAGAACATGGCGCGCACA TCATTGTTGGTACTCCAGGCCGTATCATCGATCACTTAGATCGCGGCCGCTTAGATCTAGAAAACGTACATACTTTAGTG CTTGATGAAGCCGACCGCATGTTAGAGATGGGCTTTCAGGTTGAACTTGAAGGCATCATGGAGCGCATGCCAATAGAGCG TCAGACGTTACTATTTAGCGCAACATTCCCTGAGCAGATCCAGTCTATTGCCGATAAGATCATGTTCAAACCTGTCATGG TTAAAGTGGCTTCTAGTCATGCAACAAGTACGATTGAACAACACTTCTATGAAGTGGGTAATAATAACGATCGCATGCGT GCGCTAAAGTTATTGTTACTGCAATACCGCCCTGAAAGCGCGGTGGTATTTTGTAATACCAAGCGTGAAACGAAAGATGT TGCTGCCCAGTTGAAGAATGACGGCTTTAGCGTTGTTGCTCTACACGGTGATTTAGAGCAAAGAGATAGAGACCAAACCT TATTGCAGTTTGCCAATAAGAGTGTGTCTATCATGGTGGCAACTGATGTTGCTGCGCGTGGTCTTGATATCGACGCCCTC GATGCGGTAATTAACTATCATGTTGCTTATGACACTGAAGTACATATTCACCGTATTGGCCGTACAGGCCGTGCGGGTAG CAAAGGTTCAGCGCACACTTTTTATAGTGACGAAGATGGCTACAAGATTGCGTTACTTGAAGATTATTTAGAGCGCGATA TTGTTAACGAGGCACTACCGCCTGAAAATCTGTTAGATACCTTCCCGGTACAACCTGTAATGATCACCTTACAAATTGAT GGTGGTAAAAAGCAGAAACTACGTCCTGGTGACATTCTTGGCGCATTGACTGGCGAAGATGGTATTGAGGGAAGTGAAGT CGGTAAGATTAAGATCACCGATATGCGATCTTATGTTGCTGTTAACCGTAAAGTGGCGAAAAAAGCCCTGCATAAAATTA CCAACGGCAAGCTAAAGGGCCGTTCATACCGTGCATGGGAAATGCGTTAA
Upstream 100 bases:
>100_bases GATTTTATCACTGCAAGCGTGATTTGATGAACCTGATTAAGGTATCGAGTCCTAGAGGGGAAACGGCCCTAAACAGCAGT GAATACTTAGGAAAGATACT
Downstream 100 bases:
>100_bases ACGCATTTTACTTCAGGTATAAAAAAGCAGCGCTTAGGCGCTGCTTTTTTGTGCCTGGAGCACTTATGCCAAGACCCATG GATGGCTAGTCTTGGTATTT
Product: ATP-dependent RNA helicase DbpA
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 469; Mature: 468
Protein sequence:
>469_residues MTQSVPNTDGQAPFSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR IQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLENVHTLV LDEADRMLEMGFQVELEGIMERMPIERQTLLFSATFPEQIQSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMR ALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDAL DAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLEDYLERDIVNEALPPENLLDTFPVQPVMITLQID GGKKQKLRPGDILGALTGEDGIEGSEVGKIKITDMRSYVAVNRKVAKKALHKITNGKLKGRSYRAWEMR
Sequences:
>Translated_469_residues MTQSVPNTDGQAPFSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFR IQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLENVHTLV LDEADRMLEMGFQVELEGIMERMPIERQTLLFSATFPEQIQSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMR ALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDAL DAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLEDYLERDIVNEALPPENLLDTFPVQPVMITLQID GGKKQKLRPGDILGALTGEDGIEGSEVGKIKITDMRSYVAVNRKVAKKALHKITNGKLKGRSYRAWEMR >Mature_468_residues TQSVPNTDGQAPFSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRI QTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLENVHTLVL DEADRMLEMGFQVELEGIMERMPIERQTLLFSATFPEQIQSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMRA LKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANKSVSIMVATDVAARGLDIDALD AVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDGYKIALLEDYLERDIVNEALPPENLLDTFPVQPVMITLQIDG GKKQKLRPGDILGALTGEDGIEGSEVGKIKITDMRSYVAVNRKVAKKALHKITNGKLKGRSYRAWEMR
Specific function: Has a helix-destabilizing activity, which is not coupled to the ATPase activity. Can unwind the 23S rRNA as well as 16S rRNA. Exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA. Could play a major role in ribosome ass
COG id: COG0513
COG function: function code LKJ; Superfamily II DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Homo sapiens, GI45446747, Length=404, Percent_Identity=36.8811881188119, Blast_Score=247, Evalue=2e-65, Organism=Homo sapiens, GI45446743, Length=404, Percent_Identity=36.8811881188119, Blast_Score=247, Evalue=2e-65, Organism=Homo sapiens, GI7661920, Length=368, Percent_Identity=35.054347826087, Blast_Score=239, Evalue=3e-63, Organism=Homo sapiens, GI41327773, Length=389, Percent_Identity=37.0179948586118, Blast_Score=237, Evalue=2e-62, Organism=Homo sapiens, GI20149629, Length=359, Percent_Identity=36.7688022284123, Blast_Score=236, Evalue=3e-62, Organism=Homo sapiens, GI4758138, Length=379, Percent_Identity=33.7730870712401, Blast_Score=234, Evalue=2e-61, Organism=Homo sapiens, GI148613856, Length=353, Percent_Identity=34.8441926345609, Blast_Score=231, Evalue=1e-60, Organism=Homo sapiens, GI38201710, Length=353, Percent_Identity=34.8441926345609, Blast_Score=231, Evalue=1e-60, Organism=Homo sapiens, GI50659095, Length=388, Percent_Identity=37.1134020618557, Blast_Score=230, Evalue=2e-60, Organism=Homo sapiens, GI87196351, Length=382, Percent_Identity=36.3874345549738, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI301171467, Length=382, Percent_Identity=36.3874345549738, Blast_Score=228, Evalue=1e-59, Organism=Homo sapiens, GI301171475, Length=382, Percent_Identity=36.3874345549738, Blast_Score=227, Evalue=1e-59, Organism=Homo sapiens, GI31542656, Length=373, Percent_Identity=35.9249329758713, Blast_Score=227, Evalue=2e-59, Organism=Homo sapiens, GI169881239, Length=370, Percent_Identity=36.4864864864865, Blast_Score=226, Evalue=5e-59, Organism=Homo sapiens, GI13514809, Length=370, Percent_Identity=36.4864864864865, Blast_Score=226, Evalue=5e-59, Organism=Homo sapiens, GI164664518, Length=373, Percent_Identity=32.4396782841823, Blast_Score=225, Evalue=6e-59, Organism=Homo sapiens, GI262118318, Length=367, Percent_Identity=36.7847411444142, Blast_Score=225, Evalue=6e-59, Organism=Homo sapiens, GI216548263, Length=367, Percent_Identity=36.7847411444142, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI262231852, Length=367, Percent_Identity=36.7847411444142, Blast_Score=224, Evalue=2e-58, Organism=Homo sapiens, GI13518015, Length=367, Percent_Identity=36.7847411444142, Blast_Score=223, Evalue=2e-58, Organism=Homo sapiens, GI21071032, Length=363, Percent_Identity=36.9146005509642, Blast_Score=215, Evalue=9e-56, Organism=Homo sapiens, GI13129006, Length=367, Percent_Identity=37.874659400545, Blast_Score=213, Evalue=3e-55, Organism=Homo sapiens, GI41327771, Length=409, Percent_Identity=33.2518337408313, Blast_Score=209, Evalue=5e-54, Organism=Homo sapiens, GI222352149, Length=370, Percent_Identity=35.6756756756757, Blast_Score=208, Evalue=7e-54, Organism=Homo sapiens, GI224593278, Length=358, Percent_Identity=35.4748603351955, Blast_Score=203, Evalue=2e-52, Organism=Homo sapiens, GI21040371, Length=376, Percent_Identity=32.4468085106383, Blast_Score=200, Evalue=2e-51, Organism=Homo sapiens, GI4758112, Length=373, Percent_Identity=33.7801608579088, Blast_Score=199, Evalue=3e-51, Organism=Homo sapiens, GI18375623, Length=373, Percent_Identity=33.7801608579088, Blast_Score=199, Evalue=3e-51, Organism=Homo sapiens, GI83700235, Length=349, Percent_Identity=36.3896848137536, Blast_Score=199, Evalue=3e-51, Organism=Homo sapiens, GI51094101, Length=357, Percent_Identity=34.453781512605, Blast_Score=196, Evalue=3e-50, Organism=Homo sapiens, GI164419743, Length=357, Percent_Identity=34.453781512605, Blast_Score=196, Evalue=3e-50, Organism=Homo sapiens, GI188035877, Length=348, Percent_Identity=33.0459770114943, Blast_Score=196, Evalue=5e-50, Organism=Homo sapiens, GI41327776, Length=359, Percent_Identity=33.1476323119777, Blast_Score=193, Evalue=3e-49, Organism=Homo sapiens, GI4503529, Length=370, Percent_Identity=34.0540540540541, Blast_Score=192, Evalue=5e-49, Organism=Homo sapiens, GI38327634, Length=356, Percent_Identity=36.7977528089888, Blast_Score=185, Evalue=7e-47, Organism=Homo sapiens, GI256223453, Length=352, Percent_Identity=30.6818181818182, Blast_Score=183, Evalue=3e-46, Organism=Homo sapiens, GI13514831, Length=353, Percent_Identity=33.7110481586402, Blast_Score=179, Evalue=3e-45, Organism=Homo sapiens, GI41327779, Length=394, Percent_Identity=29.6954314720812, Blast_Score=178, Evalue=8e-45, Organism=Homo sapiens, GI8922886, Length=353, Percent_Identity=32.0113314447592, Blast_Score=177, Evalue=2e-44, Organism=Homo sapiens, GI55749865, Length=367, Percent_Identity=29.700272479564, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI6005743, Length=353, Percent_Identity=32.0113314447592, Blast_Score=176, Evalue=3e-44, Organism=Homo sapiens, GI164419732, Length=361, Percent_Identity=30.4709141274238, Blast_Score=175, Evalue=6e-44, Organism=Homo sapiens, GI38569503, Length=351, Percent_Identity=32.4786324786325, Blast_Score=172, Evalue=5e-43, Organism=Homo sapiens, GI38569505, Length=351, Percent_Identity=32.4786324786325, Blast_Score=171, Evalue=1e-42, Organism=Homo sapiens, GI62241022, Length=337, Percent_Identity=31.7507418397626, Blast_Score=167, Evalue=1e-41, Organism=Homo sapiens, GI62241024, Length=315, Percent_Identity=31.7460317460317, Blast_Score=159, Evalue=5e-39, Organism=Homo sapiens, GI9506931, Length=396, Percent_Identity=28.030303030303, Blast_Score=149, Evalue=4e-36, Organism=Homo sapiens, GI9966805, Length=350, Percent_Identity=32.8571428571429, Blast_Score=133, Evalue=5e-31, Organism=Homo sapiens, GI4826686, Length=336, Percent_Identity=30.3571428571429, Blast_Score=132, Evalue=5e-31, Organism=Homo sapiens, GI256773275, Length=381, Percent_Identity=28.3464566929134, Blast_Score=121, Evalue=2e-27, Organism=Homo sapiens, GI17505907, Length=216, Percent_Identity=34.2592592592593, Blast_Score=115, Evalue=7e-26, Organism=Homo sapiens, GI20336298, Length=216, Percent_Identity=34.2592592592593, Blast_Score=114, Evalue=2e-25, Organism=Homo sapiens, GI154759257, Length=407, Percent_Identity=25.3071253071253, Blast_Score=109, Evalue=5e-24, Organism=Escherichia coli, GI1787605, Length=452, Percent_Identity=51.9911504424779, Blast_Score=468, Evalue=1e-133, Organism=Escherichia coli, GI87082221, Length=373, Percent_Identity=43.1635388739946, Blast_Score=289, Evalue=3e-79, Organism=Escherichia coli, GI1787016, Length=388, Percent_Identity=36.8556701030928, Blast_Score=256, Evalue=3e-69, Organism=Escherichia coli, GI1790214, Length=394, Percent_Identity=35.2791878172589, Blast_Score=226, Evalue=2e-60, Organism=Escherichia coli, GI1788930, Length=354, Percent_Identity=35.3107344632768, Blast_Score=189, Evalue=4e-49, Organism=Escherichia coli, GI48994977, Length=362, Percent_Identity=24.3093922651934, Blast_Score=69, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71995724, Length=363, Percent_Identity=37.465564738292, Blast_Score=249, Evalue=2e-66, Organism=Caenorhabditis elegans, GI17507121, Length=363, Percent_Identity=37.465564738292, Blast_Score=249, Evalue=3e-66, Organism=Caenorhabditis elegans, GI71987143, Length=368, Percent_Identity=34.7826086956522, Blast_Score=244, Evalue=8e-65, Organism=Caenorhabditis elegans, GI86570094, Length=361, Percent_Identity=39.612188365651, Blast_Score=241, Evalue=8e-64, Organism=Caenorhabditis elegans, GI17552642, Length=354, Percent_Identity=38.9830508474576, Blast_Score=240, Evalue=1e-63, Organism=Caenorhabditis elegans, GI17555296, Length=348, Percent_Identity=39.9425287356322, Blast_Score=238, Evalue=5e-63, Organism=Caenorhabditis elegans, GI71995718, Length=369, Percent_Identity=40.1084010840108, Blast_Score=231, Evalue=4e-61, Organism=Caenorhabditis elegans, GI115533224, Length=341, Percent_Identity=37.5366568914956, Blast_Score=229, Evalue=3e-60, Organism=Caenorhabditis elegans, GI17510307, Length=367, Percent_Identity=36.5122615803815, Blast_Score=214, Evalue=8e-56, Organism=Caenorhabditis elegans, GI71995514, Length=367, Percent_Identity=36.5122615803815, Blast_Score=214, Evalue=1e-55, Organism=Caenorhabditis elegans, GI17510309, Length=367, Percent_Identity=36.5122615803815, Blast_Score=214, Evalue=1e-55, Organism=Caenorhabditis elegans, GI17552114, Length=379, Percent_Identity=31.6622691292876, Blast_Score=213, Evalue=2e-55, Organism=Caenorhabditis elegans, GI17507945, Length=356, Percent_Identity=37.0786516853933, Blast_Score=211, Evalue=6e-55, Organism=Caenorhabditis elegans, GI115532546, Length=356, Percent_Identity=35.6741573033708, Blast_Score=207, Evalue=1e-53, Organism=Caenorhabditis elegans, GI115532548, Length=364, Percent_Identity=35.4395604395604, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17507877, Length=372, Percent_Identity=36.2903225806452, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI32565321, Length=396, Percent_Identity=33.8383838383838, Blast_Score=205, Evalue=3e-53, Organism=Caenorhabditis elegans, GI71999646, Length=332, Percent_Identity=34.9397590361446, Blast_Score=200, Evalue=1e-51, Organism=Caenorhabditis elegans, GI17537549, Length=382, Percent_Identity=33.5078534031414, Blast_Score=199, Evalue=2e-51, Organism=Caenorhabditis elegans, GI17507879, Length=372, Percent_Identity=36.0215053763441, Blast_Score=199, Evalue=2e-51, Organism=Caenorhabditis elegans, GI71999644, Length=349, Percent_Identity=33.5243553008596, Blast_Score=199, Evalue=3e-51, Organism=Caenorhabditis elegans, GI17510559, Length=402, Percent_Identity=32.3383084577114, Blast_Score=196, Evalue=3e-50, Organism=Caenorhabditis elegans, GI71982858, Length=354, Percent_Identity=31.0734463276836, Blast_Score=191, Evalue=8e-49, Organism=Caenorhabditis elegans, GI17507881, Length=378, Percent_Identity=33.5978835978836, Blast_Score=191, Evalue=9e-49, Organism=Caenorhabditis elegans, GI17505370, Length=347, Percent_Identity=34.5821325648415, Blast_Score=189, Evalue=4e-48, Organism=Caenorhabditis elegans, GI17509811, Length=348, Percent_Identity=32.7586206896552, Blast_Score=182, Evalue=3e-46, Organism=Caenorhabditis elegans, GI17536099, Length=399, Percent_Identity=31.077694235589, Blast_Score=179, Evalue=4e-45, Organism=Caenorhabditis elegans, GI193206561, Length=351, Percent_Identity=30.7692307692308, Blast_Score=178, Evalue=4e-45, Organism=Caenorhabditis elegans, GI17536101, Length=399, Percent_Identity=31.077694235589, Blast_Score=178, Evalue=7e-45, Organism=Caenorhabditis elegans, GI17536103, Length=399, Percent_Identity=31.077694235589, Blast_Score=174, Evalue=7e-44, Organism=Caenorhabditis elegans, GI17553716, Length=365, Percent_Identity=29.3150684931507, Blast_Score=173, Evalue=2e-43, Organism=Caenorhabditis elegans, GI193208216, Length=393, Percent_Identity=29.5165394402036, Blast_Score=162, Evalue=4e-40, Organism=Caenorhabditis elegans, GI17508543, Length=375, Percent_Identity=29.6, Blast_Score=147, Evalue=1e-35, Organism=Caenorhabditis elegans, GI17556951, Length=387, Percent_Identity=28.1653746770026, Blast_Score=145, Evalue=3e-35, Organism=Caenorhabditis elegans, GI71990816, Length=367, Percent_Identity=33.7874659400545, Blast_Score=143, Evalue=2e-34, Organism=Caenorhabditis elegans, GI17507641, Length=379, Percent_Identity=30.6068601583113, Blast_Score=142, Evalue=4e-34, Organism=Caenorhabditis elegans, GI32564046, Length=369, Percent_Identity=30.3523035230352, Blast_Score=134, Evalue=1e-31, Organism=Caenorhabditis elegans, GI25148203, Length=430, Percent_Identity=23.4883720930233, Blast_Score=122, Evalue=4e-28, Organism=Caenorhabditis elegans, GI71982862, Length=197, Percent_Identity=31.9796954314721, Blast_Score=119, Evalue=4e-27, Organism=Caenorhabditis elegans, GI25148291, Length=343, Percent_Identity=27.4052478134111, Blast_Score=115, Evalue=4e-26, Organism=Caenorhabditis elegans, GI71997889, Length=363, Percent_Identity=26.9972451790634, Blast_Score=106, Evalue=2e-23, Organism=Caenorhabditis elegans, GI25148205, Length=356, Percent_Identity=23.314606741573, Blast_Score=95, Evalue=7e-20, Organism=Caenorhabditis elegans, GI71987152, Length=110, Percent_Identity=37.2727272727273, Blast_Score=87, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6324217, Length=381, Percent_Identity=37.7952755905512, Blast_Score=249, Evalue=5e-67, Organism=Saccharomyces cerevisiae, GI6321360, Length=337, Percent_Identity=40.6528189910979, Blast_Score=239, Evalue=7e-64, Organism=Saccharomyces cerevisiae, GI6320224, Length=362, Percent_Identity=33.9779005524862, Blast_Score=233, Evalue=5e-62, Organism=Saccharomyces cerevisiae, GI6321856, Length=371, Percent_Identity=37.7358490566038, Blast_Score=226, Evalue=6e-60, Organism=Saccharomyces cerevisiae, GI6324778, Length=387, Percent_Identity=36.4341085271318, Blast_Score=226, Evalue=9e-60, Organism=Saccharomyces cerevisiae, GI6320041, Length=379, Percent_Identity=33.245382585752, Blast_Score=225, Evalue=1e-59, Organism=Saccharomyces cerevisiae, GI6325138, Length=366, Percent_Identity=36.8852459016393, Blast_Score=219, Evalue=5e-58, Organism=Saccharomyces cerevisiae, GI6323021, Length=350, Percent_Identity=38, Blast_Score=214, Evalue=2e-56, Organism=Saccharomyces cerevisiae, GI6320449, Length=385, Percent_Identity=34.8051948051948, Blast_Score=210, Evalue=4e-55, Organism=Saccharomyces cerevisiae, GI6322912, Length=370, Percent_Identity=35.4054054054054, Blast_Score=204, Evalue=2e-53, Organism=Saccharomyces cerevisiae, GI6322323, Length=370, Percent_Identity=35.4054054054054, Blast_Score=204, Evalue=2e-53, Organism=Saccharomyces cerevisiae, GI6320173, Length=449, Percent_Identity=31.4031180400891, Blast_Score=204, Evalue=3e-53, Organism=Saccharomyces cerevisiae, GI6323947, Length=351, Percent_Identity=34.4729344729345, Blast_Score=194, Evalue=2e-50, Organism=Saccharomyces cerevisiae, GI6321963, Length=377, Percent_Identity=34.2175066312997, Blast_Score=192, Evalue=9e-50, Organism=Saccharomyces cerevisiae, GI6324620, Length=373, Percent_Identity=31.0991957104558, Blast_Score=184, Evalue=3e-47, Organism=Saccharomyces cerevisiae, GI6319714, Length=356, Percent_Identity=31.4606741573034, Blast_Score=184, Evalue=4e-47, Organism=Saccharomyces cerevisiae, GI6320119, Length=379, Percent_Identity=29.5514511873351, Blast_Score=177, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6319618, Length=428, Percent_Identity=29.2056074766355, Blast_Score=176, Evalue=5e-45, Organism=Saccharomyces cerevisiae, GI6322427, Length=360, Percent_Identity=33.6111111111111, Blast_Score=175, Evalue=1e-44, Organism=Saccharomyces cerevisiae, GI6321111, Length=368, Percent_Identity=31.5217391304348, Blast_Score=169, Evalue=1e-42, Organism=Saccharomyces cerevisiae, GI6321267, Length=363, Percent_Identity=32.7823691460055, Blast_Score=165, Evalue=2e-41, Organism=Saccharomyces cerevisiae, GI6320400, Length=381, Percent_Identity=30.7086614173228, Blast_Score=145, Evalue=1e-35, Organism=Saccharomyces cerevisiae, GI6322876, Length=422, Percent_Identity=26.7772511848341, Blast_Score=121, Evalue=2e-28, Organism=Saccharomyces cerevisiae, GI6323306, Length=413, Percent_Identity=23.4866828087167, Blast_Score=114, Evalue=3e-26, Organism=Saccharomyces cerevisiae, GI6324366, Length=431, Percent_Identity=23.6658932714617, Blast_Score=108, Evalue=2e-24, Organism=Drosophila melanogaster, GI24662330, Length=353, Percent_Identity=40.2266288951841, Blast_Score=248, Evalue=8e-66, Organism=Drosophila melanogaster, GI24645031, Length=362, Percent_Identity=36.7403314917127, Blast_Score=245, Evalue=5e-65, Organism=Drosophila melanogaster, GI24584399, Length=359, Percent_Identity=39.2757660167131, Blast_Score=244, Evalue=7e-65, Organism=Drosophila melanogaster, GI24642151, Length=345, Percent_Identity=40.5797101449275, Blast_Score=244, Evalue=8e-65, Organism=Drosophila melanogaster, GI28574962, Length=351, Percent_Identity=36.4672364672365, Blast_Score=233, Evalue=3e-61, Organism=Drosophila melanogaster, GI21355075, Length=347, Percent_Identity=36.3112391930836, Blast_Score=227, Evalue=2e-59, Organism=Drosophila melanogaster, GI24644483, Length=395, Percent_Identity=34.6835443037975, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI24644479, Length=395, Percent_Identity=34.6835443037975, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI24644487, Length=395, Percent_Identity=34.6835443037975, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI45551833, Length=395, Percent_Identity=34.6835443037975, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI24644485, Length=395, Percent_Identity=34.6835443037975, Blast_Score=226, Evalue=2e-59, Organism=Drosophila melanogaster, GI24585582, Length=347, Percent_Identity=37.7521613832853, Blast_Score=226, Evalue=3e-59, Organism=Drosophila melanogaster, GI281361218, Length=395, Percent_Identity=34.6835443037975, Blast_Score=226, Evalue=3e-59, Organism=Drosophila melanogaster, GI24644481, Length=395, Percent_Identity=34.6835443037975, Blast_Score=226, Evalue=3e-59, Organism=Drosophila melanogaster, GI17985987, Length=372, Percent_Identity=37.0967741935484, Blast_Score=223, Evalue=2e-58, Organism=Drosophila melanogaster, GI18857967, Length=375, Percent_Identity=33.8666666666667, Blast_Score=219, Evalue=3e-57, Organism=Drosophila melanogaster, GI28575014, Length=365, Percent_Identity=35.8904109589041, Blast_Score=214, Evalue=1e-55, Organism=Drosophila melanogaster, GI24582080, Length=368, Percent_Identity=34.5108695652174, Blast_Score=212, Evalue=5e-55, Organism=Drosophila melanogaster, GI24582078, Length=368, Percent_Identity=34.5108695652174, Blast_Score=212, Evalue=5e-55, Organism=Drosophila melanogaster, GI17136248, Length=368, Percent_Identity=34.5108695652174, Blast_Score=212, Evalue=5e-55, Organism=Drosophila melanogaster, GI24582075, Length=368, Percent_Identity=34.5108695652174, Blast_Score=212, Evalue=5e-55, Organism=Drosophila melanogaster, GI24584994, Length=416, Percent_Identity=33.1730769230769, Blast_Score=211, Evalue=1e-54, Organism=Drosophila melanogaster, GI24583281, Length=373, Percent_Identity=31.0991957104558, Blast_Score=209, Evalue=3e-54, Organism=Drosophila melanogaster, GI24583279, Length=373, Percent_Identity=31.0991957104558, Blast_Score=209, Evalue=3e-54, Organism=Drosophila melanogaster, GI17977678, Length=354, Percent_Identity=34.7457627118644, Blast_Score=205, Evalue=5e-53, Organism=Drosophila melanogaster, GI21356161, Length=377, Percent_Identity=34.4827586206897, Blast_Score=203, Evalue=2e-52, Organism=Drosophila melanogaster, GI17136814, Length=353, Percent_Identity=36.2606232294618, Blast_Score=198, Evalue=8e-51, Organism=Drosophila melanogaster, GI281365720, Length=304, Percent_Identity=35.8552631578947, Blast_Score=189, Evalue=3e-48, Organism=Drosophila melanogaster, GI28571808, Length=352, Percent_Identity=36.0795454545455, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI28571809, Length=352, Percent_Identity=36.0795454545455, Blast_Score=187, Evalue=1e-47, Organism=Drosophila melanogaster, GI24581954, Length=401, Percent_Identity=31.4214463840399, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24581952, Length=401, Percent_Identity=31.4214463840399, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24581956, Length=401, Percent_Identity=31.4214463840399, Blast_Score=186, Evalue=3e-47, Organism=Drosophila melanogaster, GI24666101, Length=353, Percent_Identity=33.4277620396601, Blast_Score=164, Evalue=8e-41, Organism=Drosophila melanogaster, GI24642822, Length=377, Percent_Identity=31.2997347480106, Blast_Score=162, Evalue=4e-40, Organism=Drosophila melanogaster, GI17647335, Length=352, Percent_Identity=31.5340909090909, Blast_Score=161, Evalue=7e-40, Organism=Drosophila melanogaster, GI21355559, Length=377, Percent_Identity=29.973474801061, Blast_Score=149, Evalue=6e-36, Organism=Drosophila melanogaster, GI24643725, Length=393, Percent_Identity=26.972010178117, Blast_Score=139, Evalue=6e-33, Organism=Drosophila melanogaster, GI19920478, Length=377, Percent_Identity=29.7082228116711, Blast_Score=136, Evalue=3e-32, Organism=Drosophila melanogaster, GI24668515, Length=321, Percent_Identity=29.2834890965732, Blast_Score=132, Evalue=3e-31, Organism=Drosophila melanogaster, GI20130173, Length=352, Percent_Identity=30.1136363636364, Blast_Score=122, Evalue=5e-28, Organism=Drosophila melanogaster, GI17136666, Length=412, Percent_Identity=25.4854368932039, Blast_Score=117, Evalue=2e-26, Organism=Drosophila melanogaster, GI18859659, Length=232, Percent_Identity=31.4655172413793, Blast_Score=115, Evalue=9e-26, Organism=Drosophila melanogaster, GI28571338, Length=232, Percent_Identity=31.4655172413793, Blast_Score=115, Evalue=9e-26, Organism=Drosophila melanogaster, GI24640164, Length=346, Percent_Identity=22.5433526011561, Blast_Score=89, Evalue=8e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005580 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR014021 - InterPro: IPR000629 - InterPro: IPR014014 [H]
Pfam domain/function: PF03880 DbpA; PF00270 DEAD; PF00271 Helicase_C [H]
EC number: =3.6.4.13 [H]
Molecular weight: Translated: 51830; Mature: 51699
Theoretical pI: Translated: 7.01; Mature: 7.01
Prosite motif: PS00039 DEAD_ATP_HELICASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSVPNTDGQAPFSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGS CCCCCCCCCCCCCHHHCCEEEEEHHHHHHCCCCCCCCCCHHCCCEEECCCCEECCCCCCC GKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVP CCCHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC MGPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIM CCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHEEEHHHHHHHHHCCCEEEHHHHH ERMPIERQTLLFSATFPEQIQSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMR HHCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCHHHH ALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANK HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCC SVSIMVATDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDG CEEEEEEECHHHCCCCHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCCCCEEECCCCC YKIALLEDYLERDIVNEALPPENLLDTFPVQPVMITLQIDGGKKQKLRPGDILGALTGED CEEEHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCC GIEGSEVGKIKITDMRSYVAVNRKVAKKALHKITNGKLKGRSYRAWEMR CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC >Mature Secondary Structure TQSVPNTDGQAPFSSLNLKVELLDNLKTMGYESMTPIQAQSLPAILNGEDVIGQGKTGS CCCCCCCCCCCCHHHCCEEEEEHHHHHHCCCCCCCCCCHHCCCEEECCCCEECCCCCCC GKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAKEIRTLARGIHNIKVLTLCGGVP CCCHHHHHHHHHHHHHHHEEEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC MGPQIGSLEHGAHIIVGTPGRIIDHLDRGRLDLENVHTLVLDEADRMLEMGFQVELEGIM CCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCHHHHHEEEHHHHHHHHHCCCEEEHHHHH ERMPIERQTLLFSATFPEQIQSIADKIMFKPVMVKVASSHATSTIEQHFYEVGNNNDRMR HHCCCCHHEEEEECCCHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHCCCCHHHH ALKLLLLQYRPESAVVFCNTKRETKDVAAQLKNDGFSVVALHGDLEQRDRDQTLLQFANK HHHHHHHHCCCCCEEEEECCCCHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCC SVSIMVATDVAARGLDIDALDAVINYHVAYDTEVHIHRIGRTGRAGSKGSAHTFYSDEDG CEEEEEEECHHHCCCCHHHHHHHHEEEEEECCEEEEEECCCCCCCCCCCCCCEEECCCCC YKIALLEDYLERDIVNEALPPENLLDTFPVQPVMITLQIDGGKKQKLRPGDILGALTGED CEEEHHHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCC GIEGSEVGKIKITDMRSYVAVNRKVAKKALHKITNGKLKGRSYRAWEMR CCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2216714; 8253085; 9097039; 9278503; 9016593; 11350034 [H]