| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625418
Identifier: 167625418
GI number: 167625418
Start: 4283793
End: 4284686
Strand: Reverse
Name: 167625418
Synonym: Shal_3510
Alternate gene names: NA
Gene position: 4284686-4283793 (Counterclockwise)
Preceding gene: 167625421
Following gene: 167625417
Centisome position: 81.97
GC content: 44.97
Gene sequence:
>894_bases ATGCTGGATGCGATATGTTTATTCGATGAGTCGAATCCTATTACTTACTCTATATTTAAGTTTCAAAAGCTCAGCGATGC CGACATAGAGAAATATCGGCAAGCATTGATGTGTCCCGCCTGCGCTGGTAAAGCTTATTATCGAAAAGCCTCTAAAGATG GCAAGGCGGCCTGTTTTGGTTCACGCTATCACCAAGCTGATTGTCGTGAGTTCAAACCTTCGGCAGCTAAAGAGCGTGAA GAGCAGCATGCTATTGAAGTGAATCAATTATTGGTTGATAGCGATGCGATGATGATTGACTTTAGTCGTCAGCCGCGATC ATTAAAGTCCAGAGCTGAGCGCGAGACACAGACACAAAAACAGGCTCCAATACAAAAACAGGCACAAACAAGTCCAGAGC TGCTGTCGGTTAGCTCATCATCCGACCGAGTTGCGGCTCATTCCTCAAATGTTGAAAAGCGGATCGCCAGTGAAGGCCTA GAGAAAATATTGCATAGTTTAATGCGTGGTAGTGAGCTTGCAGAGTCAGAACTCTGGGTCTATACCGATGAGAAGTACCG TTGGCGAGCCAAGAACTTGTTCGTTAACTTTGCCGATGCAGAGCCGACCGAAACGGGGGCCCCACGCATGTATTGGGGGA CGATTTCTCATGTCGATAAAGAGTTGTTTTGGTTAAACCCTGCCGATAGCAAAGAGGTTGGTATACCTATCGATAAAATA GTTGAGCCATTAAAGCTAAGATTTGGTTTGGACGAGCGCCGAGATTTTGAGGGCGCGACGATGATCTTATTTGGTAAGTG TTTTTGGAATAAAGCGAAAAACCGCAAGATTATTCAGTTATGGGGTAATGATATCAATCGGATCTTTATTTCTAAGCCTG AAGAGGAGGGGTAA
Upstream 100 bases:
>100_bases TGTGGAAATGACAGCGGTGACGCCACAGTGCTAAGTGGATGCTTGTCGCCGTTGTGGATATTCTCTATGATTAAAAAATA ATGCAATTTAGGACGTTAGC
Downstream 100 bases:
>100_bases CATAATTGACCTAAAGTGTATCTGTCTTTGCCTGAATCGGCTGCGAAGCTGTAGTTTTTATTGTCGAAGTTTAGGCTGGT TTGTTATTTGATTTCATTGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 297; Mature: 297
Protein sequence:
>297_residues MLDAICLFDESNPITYSIFKFQKLSDADIEKYRQALMCPACAGKAYYRKASKDGKAACFGSRYHQADCREFKPSAAKERE EQHAIEVNQLLVDSDAMMIDFSRQPRSLKSRAERETQTQKQAPIQKQAQTSPELLSVSSSSDRVAAHSSNVEKRIASEGL EKILHSLMRGSELAESELWVYTDEKYRWRAKNLFVNFADAEPTETGAPRMYWGTISHVDKELFWLNPADSKEVGIPIDKI VEPLKLRFGLDERRDFEGATMILFGKCFWNKAKNRKIIQLWGNDINRIFISKPEEEG
Sequences:
>Translated_297_residues MLDAICLFDESNPITYSIFKFQKLSDADIEKYRQALMCPACAGKAYYRKASKDGKAACFGSRYHQADCREFKPSAAKERE EQHAIEVNQLLVDSDAMMIDFSRQPRSLKSRAERETQTQKQAPIQKQAQTSPELLSVSSSSDRVAAHSSNVEKRIASEGL EKILHSLMRGSELAESELWVYTDEKYRWRAKNLFVNFADAEPTETGAPRMYWGTISHVDKELFWLNPADSKEVGIPIDKI VEPLKLRFGLDERRDFEGATMILFGKCFWNKAKNRKIIQLWGNDINRIFISKPEEEG >Mature_297_residues MLDAICLFDESNPITYSIFKFQKLSDADIEKYRQALMCPACAGKAYYRKASKDGKAACFGSRYHQADCREFKPSAAKERE EQHAIEVNQLLVDSDAMMIDFSRQPRSLKSRAERETQTQKQAPIQKQAQTSPELLSVSSSSDRVAAHSSNVEKRIASEGL EKILHSLMRGSELAESELWVYTDEKYRWRAKNLFVNFADAEPTETGAPRMYWGTISHVDKELFWLNPADSKEVGIPIDKI VEPLKLRFGLDERRDFEGATMILFGKCFWNKAKNRKIIQLWGNDINRIFISKPEEEG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34032; Mature: 34032
Theoretical pI: Translated: 7.42; Mature: 7.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLDAICLFDESNPITYSIFKFQKLSDADIEKYRQALMCPACAGKAYYRKASKDGKAACFG CCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCHHHCCHHHHHHCCCCCCEEEEC SRYHQADCREFKPSAAKEREEQHAIEVNQLLVDSDAMMIDFSRQPRSLKSRAERETQTQK CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHH QAPIQKQAQTSPELLSVSSSSDRVAAHSSNVEKRIASEGLEKILHSLMRGSELAESELWV HCCCHHHHCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE YTDEKYRWRAKNLFVNFADAEPTETGAPRMYWGTISHVDKELFWLNPADSKEVGIPIDKI EECCCCEEEEEEEEEEECCCCCCCCCCCEEEECCHHHCCCCEEEECCCCCCCCCCCHHHH VEPLKLRFGLDERRDFEGATMILFGKCFWNKAKNRKIIQLWGNDINRIFISKPEEEG HHHHHHHCCCCHHCCCCCCEEEEEEHHHHCCCCCCEEEEEECCCCEEEEEECCCCCC >Mature Secondary Structure MLDAICLFDESNPITYSIFKFQKLSDADIEKYRQALMCPACAGKAYYRKASKDGKAACFG CCCEEEEEECCCCEEEEEEEECCCCCHHHHHHHHHHHCHHHCCHHHHHHCCCCCCEEEEC SRYHQADCREFKPSAAKEREEQHAIEVNQLLVDSDAMMIDFSRQPRSLKSRAERETQTQK CCCCCCHHHHCCCCHHHHHHHHHHHHHHHHEECCCCEEEEECCCCHHHHHHHHHHHHHHH QAPIQKQAQTSPELLSVSSSSDRVAAHSSNVEKRIASEGLEKILHSLMRGSELAESELWV HCCCHHHHCCCCCEEEECCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE YTDEKYRWRAKNLFVNFADAEPTETGAPRMYWGTISHVDKELFWLNPADSKEVGIPIDKI EECCCCEEEEEEEEEEECCCCCCCCCCCEEEECCHHHCCCCEEEECCCCCCCCCCCHHHH VEPLKLRFGLDERRDFEGATMILFGKCFWNKAKNRKIIQLWGNDINRIFISKPEEEG HHHHHHHCCCCHHCCCCCCEEEEEEHHHHCCCCCCEEEEEECCCCEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA