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The map label for this gene is 167625390

Identifier: 167625390

GI number: 167625390

Start: 4241155

End: 4241829

Strand: Reverse

Name: 167625390

Synonym: Shal_3480

Alternate gene names: NA

Gene position: 4241829-4241155 (Counterclockwise)

Preceding gene: 167625392

Following gene: 167625384

Centisome position: 81.15

GC content: 40.59

Gene sequence:

>675_bases
ATGGATAAAATCCCCGACTATGCTTCGTATAGTTATGATGAGCTACTTGATGTAGAGCAGCATATAAATAAAAAGCAGTA
CCCAGAACGTTATGCAGAGATTATAAGGCTCATCAATGATCCTCGTTATCTAAAAGAGGATAAACAGGAATGTGAGCGTC
GTGATCAAGTTAGTAAATACTCGACTTTTTGGCCGCGTTTCTGGGCGGCTATGCTCGACGGGATCTTGTTCAGTGCGTTA
CTTATCGGTCAATGCTATCTATTTGGTGTTGAATACGATCAGCAGAACCATTTTCAACAAGCCATTCATGGCATGCAGCT
TTGTTTCTACATCATCCTAATGCACGGTTTCTTCGGCCAGACAATTGGAAAAATGTGCTTAAAGGTTAAGGTCTTGAATC
ATGATGACGAGACTAGAATTGGGCTTAAACAAGCGCTCCGCAGAGAGTCGGTTAATTTCGCCATTAATGCATTCTGGTTA
GGCTTACTGTTATATATCGGAGTGACCGTTGGGCTAAATGGCAATATTTCAGATTCACTCATTAACACCGTGATTGCATT
CGGCGTATTGGCATTTATTTGGGATATTTCAGAGTTTATTACCATGTTATCTAACGAAAAACGCCGTGCACTTCACGACT
ATATAGGTAAAACAGTTGTAGTCAGAATGCAGTAA

Upstream 100 bases:

>100_bases
GGTAATGTTTAAAAGGCAATTCTAAGTCTAGCCATTACCATTCAATTTCTGTGTTTTTTATCAAAGCTGATGTAATGCCT
CAAAGGAAGAGTACGATTTT

Downstream 100 bases:

>100_bases
TAAAGAACACACTCAAAATTTGAAGCCAGTTGCTGTAGCAACTGGCTTTTGATTATAAGGGTTATATATTTAGCTCACTT
TAATGCGAAAGCTTAACTCT

Product: RDD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MDKIPDYASYSYDELLDVEQHINKKQYPERYAEIIRLINDPRYLKEDKQECERRDQVSKYSTFWPRFWAAMLDGILFSAL
LIGQCYLFGVEYDQQNHFQQAIHGMQLCFYIILMHGFFGQTIGKMCLKVKVLNHDDETRIGLKQALRRESVNFAINAFWL
GLLLYIGVTVGLNGNISDSLINTVIAFGVLAFIWDISEFITMLSNEKRRALHDYIGKTVVVRMQ

Sequences:

>Translated_224_residues
MDKIPDYASYSYDELLDVEQHINKKQYPERYAEIIRLINDPRYLKEDKQECERRDQVSKYSTFWPRFWAAMLDGILFSAL
LIGQCYLFGVEYDQQNHFQQAIHGMQLCFYIILMHGFFGQTIGKMCLKVKVLNHDDETRIGLKQALRRESVNFAINAFWL
GLLLYIGVTVGLNGNISDSLINTVIAFGVLAFIWDISEFITMLSNEKRRALHDYIGKTVVVRMQ
>Mature_224_residues
MDKIPDYASYSYDELLDVEQHINKKQYPERYAEIIRLINDPRYLKEDKQECERRDQVSKYSTFWPRFWAAMLDGILFSAL
LIGQCYLFGVEYDQQNHFQQAIHGMQLCFYIILMHGFFGQTIGKMCLKVKVLNHDDETRIGLKQALRRESVNFAINAFWL
GLLLYIGVTVGLNGNISDSLINTVIAFGVLAFIWDISEFITMLSNEKRRALHDYIGKTVVVRMQ

Specific function: Unknown

COG id: COG1714

COG function: function code S; Predicted membrane protein/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26168; Mature: 26168

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIPDYASYSYDELLDVEQHINKKQYPERYAEIIRLINDPRYLKEDKQECERRDQVSKY
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
STFWPRFWAAMLDGILFSALLIGQCYLFGVEYDQQNHFQQAIHGMQLCFYIILMHGFFGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIGKMCLKVKVLNHDDETRIGLKQALRRESVNFAINAFWLGLLLYIGVTVGLNGNISDSL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INTVIAFGVLAFIWDISEFITMLSNEKRRALHDYIGKTVVVRMQ
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEC
>Mature Secondary Structure
MDKIPDYASYSYDELLDVEQHINKKQYPERYAEIIRLINDPRYLKEDKQECERRDQVSKY
CCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
STFWPRFWAAMLDGILFSALLIGQCYLFGVEYDQQNHFQQAIHGMQLCFYIILMHGFFGQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
TIGKMCLKVKVLNHDDETRIGLKQALRRESVNFAINAFWLGLLLYIGVTVGLNGNISDSL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
INTVIAFGVLAFIWDISEFITMLSNEKRRALHDYIGKTVVVRMQ
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA