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The map label for this gene is torR [H]

Identifier: 167625330

GI number: 167625330

Start: 4166996

End: 4167706

Strand: Reverse

Name: torR [H]

Synonym: Shal_3419

Alternate gene names: 167625330

Gene position: 4167706-4166996 (Counterclockwise)

Preceding gene: 167625331

Following gene: 167625328

Centisome position: 79.74

GC content: 46.13

Gene sequence:

>711_bases
ATGGGTTACCGAGTACTAGTTGTCGATGATGAAGCGGTCATCAGAGCTAGGTTAAAAGGTTATTTTGAGAAAGAGGGCTA
TGAAGTGCTCGAAGCTCAAGATGGCGACCAGATGTGGTACGAATTTGAGCGTCAACATATCGACTTGGTTATGCTCGATA
TTAACTTACCCGGTGTCGACGGTTTGAGTCTTGCACGCGAGCTTCGCGGCAAGAGTCATGTGGGTATTATCTTGGTCACA
GGCCGCGATGAAACCATAGATAAAATTGTCGGTTTAGAGATGGGCGCCGATGATTATGTCACAAAGCCTTTCGAGCTCAG
GGAGTTACTCGTTAGGGTCAAGAACCTACTTTGGCGCATGTCGCTGGTCAAGAAAGCCGTAGCCGATAGCGCCGAGCATG
TCGATCCCGATGATAATATTATCGCTTTCGATGATTACCTTTTAGAGCTTAATAGTCGCCAACTAACCCATAATGGCGAG
CCCATTAAGCTGACTAAAGCAGAGTTTGAACTGCTCACCGCTTTTTCTCTACACCCTCAACAGGTGCTATCTCGCGAGCG
TTTAATGATGCAAACCAGCCACAGAGATCAAGATGTCAATGATCGCACGATTGATGTGATTATTCGTCGTTTACGCAATA
AATTATCTACAGACCTATTTGTCACAGTCCACGGTGAAGGCTACCTGTTTGCCGCGAAAGTGAAAGACTAA

Upstream 100 bases:

>100_bases
CTCCTCAACCGCTCGCTTTACGTGCTAACTTGTGTATATTATGTGGCGCAATTTTGTAGACACTTCTGTCTATAGAGGTG
GTTTAGGGTTGAGGTGGTAT

Downstream 100 bases:

>100_bases
ACTAGAACATTACTTGATTGGGTTTAGTTCTTTCATTGTGGAACGGTAAAGTTTCAAAGCCTATCTTGCTATTTAATATT
CAGTATTAACCCGGTAAATC

Product: DNA-binding transcriptional regulator TorR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MGYRVLVVDDEAVIRARLKGYFEKEGYEVLEAQDGDQMWYEFERQHIDLVMLDINLPGVDGLSLARELRGKSHVGIILVT
GRDETIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRMSLVKKAVADSAEHVDPDDNIIAFDDYLLELNSRQLTHNGE
PIKLTKAEFELLTAFSLHPQQVLSRERLMMQTSHRDQDVNDRTIDVIIRRLRNKLSTDLFVTVHGEGYLFAAKVKD

Sequences:

>Translated_236_residues
MGYRVLVVDDEAVIRARLKGYFEKEGYEVLEAQDGDQMWYEFERQHIDLVMLDINLPGVDGLSLARELRGKSHVGIILVT
GRDETIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRMSLVKKAVADSAEHVDPDDNIIAFDDYLLELNSRQLTHNGE
PIKLTKAEFELLTAFSLHPQQVLSRERLMMQTSHRDQDVNDRTIDVIIRRLRNKLSTDLFVTVHGEGYLFAAKVKD
>Mature_235_residues
GYRVLVVDDEAVIRARLKGYFEKEGYEVLEAQDGDQMWYEFERQHIDLVMLDINLPGVDGLSLARELRGKSHVGIILVTG
RDETIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRMSLVKKAVADSAEHVDPDDNIIAFDDYLLELNSRQLTHNGEP
IKLTKAEFELLTAFSLHPQQVLSRERLMMQTSHRDQDVNDRTIDVIIRRLRNKLSTDLFVTVHGEGYLFAAKVKD

Specific function: Member of the two-component regulatory system torS/torR involved in the anaerobic utilization of trimethylamine-N-oxide (TMAO). Phosphorylated torR activates the transcription of the torCAD operon by binding to four decameric boxes located in the torCAD p

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1787229, Length=235, Percent_Identity=53.1914893617021, Blast_Score=241, Evalue=3e-65,
Organism=Escherichia coli, GI1790863, Length=238, Percent_Identity=42.436974789916, Blast_Score=187, Evalue=5e-49,
Organism=Escherichia coli, GI1789809, Length=234, Percent_Identity=40.1709401709402, Blast_Score=164, Evalue=4e-42,
Organism=Escherichia coli, GI1786599, Length=240, Percent_Identity=35.4166666666667, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1788394, Length=234, Percent_Identity=35.4700854700855, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1787375, Length=232, Percent_Identity=34.051724137931, Blast_Score=122, Evalue=1e-29,
Organism=Escherichia coli, GI1790860, Length=212, Percent_Identity=34.9056603773585, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1786911, Length=231, Percent_Identity=33.3333333333333, Blast_Score=110, Evalue=9e-26,
Organism=Escherichia coli, GI1786784, Length=232, Percent_Identity=34.4827586206897, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI2367329, Length=234, Percent_Identity=32.4786324786325, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789402, Length=231, Percent_Identity=31.1688311688312, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1790552, Length=231, Percent_Identity=30.7359307359307, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI145693140, Length=234, Percent_Identity=31.6239316239316, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082012, Length=233, Percent_Identity=28.3261802575107, Blast_Score=98, Evalue=4e-22,
Organism=Escherichia coli, GI1788550, Length=123, Percent_Identity=35.7723577235772, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 27154; Mature: 27022

Theoretical pI: Translated: 4.96; Mature: 4.96

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYRVLVVDDEAVIRARLKGYFEKEGYEVLEAQDGDQMWYEFERQHIDLVMLDINLPGVD
CCEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCEEEEEEEECCCCCC
GLSLARELRGKSHVGIILVTGRDETIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRM
HHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKKAVADSAEHVDPDDNIIAFDDYLLELNSRQLTHNGEPIKLTKAEFELLTAFSLHPQ
HHHHHHHHCCHHCCCCCCCEEEEEHEEEEECCCEECCCCCCEEEEHHHHHHHHHHCCCHH
QVLSRERLMMQTSHRDQDVNDRTIDVIIRRLRNKLSTDLFVTVHGEGYLFAAKVKD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECC
>Mature Secondary Structure 
GYRVLVVDDEAVIRARLKGYFEKEGYEVLEAQDGDQMWYEFERQHIDLVMLDINLPGVD
CEEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCEEEEEEEECCCCCC
GLSLARELRGKSHVGIILVTGRDETIDKIVGLEMGADDYVTKPFELRELLVRVKNLLWRM
HHHHHHHHCCCCCEEEEEEECCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
SLVKKAVADSAEHVDPDDNIIAFDDYLLELNSRQLTHNGEPIKLTKAEFELLTAFSLHPQ
HHHHHHHHCCHHCCCCCCCEEEEEHEEEEECCCEECCCCCCEEEEHHHHHHHHHHCCCHH
QVLSRERLMMQTSHRDQDVNDRTIDVIIRRLRNKLSTDLFVTVHGEGYLFAAKVKD
HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]