| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is glnD [H]
Identifier: 167625213
GI number: 167625213
Start: 4025093
End: 4027666
Strand: Reverse
Name: glnD [H]
Synonym: Shal_3301
Alternate gene names: 167625213
Gene position: 4027666-4025093 (Counterclockwise)
Preceding gene: 167625215
Following gene: 167625212
Centisome position: 77.06
GC content: 43.32
Gene sequence:
>2574_bases ATGTCTAGTATAGTGGAACTGAATTCTCTCTCGGAGTTGAAGTTTCATATAAAAACCTTCGACGAAAAGCTTAATGAGCA GTTTTTAATTCTGCCAGTGCAGACTCTGCTAAAGAGGCGCGCTAAGCATATAGATGAAATGTTGGTTTCATTATGGAAGA TGTATAACTTGCATAATACCTCGATGTCGCTTAATGCGGTAGGGGGATATGGTCGAAGGGCGTTGCACCCAAGGTCTGAT ATCGATTTAGCCATTATTATCGAACAAGAGTTAACCCCGCACCAGCAAGAACAATTATCGCTTTTTCTTACCCGCCTGTG GGATTTTGGTCTAGATATAGGCCAAACCGTTAGAACACTCTGTGAATCGATTGAATCTGCAAAATCTGATATTACCATTG CTACCAATCTGCTCGATATCCGCTGTTTAGTCGGCCCTAAAAAACACGCACAAAACATTAAAGAACAGCTTTATCAAAAC GAGCTATGGACTAGTTTGTCCTTTTACGATGCTAAAATGGCCGAGCAGCAACTGAGACACAATAAAGCGCTCAATACCGC ACTTTATTTAGAGCCTAACCTCAAGAACAACCCCGGTGGATTGCGAGATGTGCACACCATTATGTGGATCGCGCAAAAGC ACTTCTCACTTACCAACGCTAATGCCCTTAAAACCATCGGTTTCTTACAGCAAGATGAAGTGTATGAGCTATTAGAGGCT TATGACTTTATCTGTCGTGTTAGGTGGGCGCTGCACTGCGTGACACAGTCTGCGCAGGATGTGTTGTTATTCGAACATCA AGCTGGTGTCGCCGAATTTATGCAGTTTGGCCAAGGTGATAATAGTCAGCTGGCAATTGAGCGTATGATGCGCCAGCTCT TTAGAGCCATGACTCGCGTGCGTGAGTTAAATCAGATCATCTGTGATTCTTTTAAGCTCGACACCCTAAACGAAACCGAG CGCGATAATCTGCAATCAATCGATAAGTATTTTAGTGTCTGTAACGGGCTTATAGAGGTGAAGTTCTCTCAGGCGTTTAT CGATAAACGCCAAGTCATACGTATGTTCAAGCTGATTGCTGAGAACGATAATATTGATGGTATTGCGCCGCAAACACTTA GATTGCTCAGACAAACCCGTCGCGGTTTACTGGGTGAGTTACAAGATTACCAAGGCTGTCGTGAAGAGTTTTTAGCGATT CTAGCGCACCCTAAGGGGCTGCGAAAATGTTTAGGCTTAATGCACCGTTACGGGGTATTAGCGGCGTATTGTTCACAGTG GCACGCTATTGAAGGCCAGATGCAGTTTGATATGCATAACGCGTTTACGGTAGATGAGCATACCTTTAAAGCCATTCAAT ATATCGACAGTTTTGCGCTCAATAAGAAAAACAGTCTCACCTATTCAATTTACCAAAATATCGGTAATCGATTTGCGTTG GTATTTGCGACCCTTTGTCATCACTTGTCAGGTAAGCAGGCGATTGAAAACAGCGAATTAAGTGCCATCCAAGCCAAAGA ATTAGCCGAAGAGCACTTACTCAAAGCCTCGACAACCTCGCTTATTTATTGGCTGGTGGCGAACCAAGATGTATTAATTA GTGCTATTCAAACCCAAGATATTAGCGATCCCGATGTAATCAAACATTTGGCTAAAGCCATCGGCTCCCAGGGTAAACTT AACGCTCTGTTTTTATTTACCATTGCCGATATGATGGCCACAAACGAAAGCTACTGGAATGACTGGCAAGAAAGCCAGTT GACGCAGCTGTATATGGCGGTGCGAGAGACGTTAAAGCAGGGAATTGAGAACATCTTCGAGGTGCGAACCGTTATTCGTG AAAACCAAACCGATGGTAGAGCTGAACTGCTAAAACTGGGCGTGGAAGAGGAGCGATTAAATCGATTCTGGCACAGTTTA CCGAACAACTTCTTTAGTGGTAATTCATTAGAGGATATCGTTGAGATAACTCAAGGTATTCTGGCTGGTGAAGCGGGAAC GACCCGAGTATTGGTGGGTAAAAATGGCGATAATGGCTTTACCAGTATTTTTGTTTATACCAAGGATAGACCCAAGTTAT TTGTCGATCTGTTTAAGACCTTAGCCAGCTCTAAGCTCAAGGTGAAAGATGCCCAGATGATGCAGACTAAAAATGGTCAA GTGCTGGAGATCATCAAGGTGCTTGATCATAAGGATGAGTCTATTGATGATGAACCTAGAATAGAGCAGATCGTTAAGCG CATCTATCGAGCGGTTGATCAAAAGGACAGACCTAGAAAGCTAATGACGCCAAGAGCCTTAAAGAATTTCGATAGTCCTC CGGTCGTTACAGTGCTACACACTACAAAGAAAAACAGAGCCCTGCTTAAGGTTAATACCTTGGATGATCCTATGTATTTA GAGCAGATCTGTAACCTACTCTCTGAACGAAATCTGAGTATCCACTCGGCGAGAATTAGTACCTTGGGCGAATGTACCGA AAACGTATTTTTGGTGTCCAACGCCGAGAAAACCTCTTTCGGTCATGATGAACAGCTAAAGCTAGTGGATATTATTGAAG AGGAAATTGCGTAA
Upstream 100 bases:
>100_bases ATGTTTTCTGCGGACTAATTAGAACGTTGAATGTTGTCATCTACCTGATGTATTAAGGTATAAACCAGTGGTTATATAGC AAATAGGAAAGAGCCTTATT
Downstream 100 bases:
>100_bases AAGCTGCTAGAATGGCTCGCTATTTTATCGCCAGCTTAGGAGATAGGCTTGAAGCTTGTTTTGTTTGATTTTGATGGCAC CTTGACCCATCAAGATATGT
Product: protein-P-II uridylyltransferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 857; Mature: 856
Protein sequence:
>857_residues MSSIVELNSLSELKFHIKTFDEKLNEQFLILPVQTLLKRRAKHIDEMLVSLWKMYNLHNTSMSLNAVGGYGRRALHPRSD IDLAIIIEQELTPHQQEQLSLFLTRLWDFGLDIGQTVRTLCESIESAKSDITIATNLLDIRCLVGPKKHAQNIKEQLYQN ELWTSLSFYDAKMAEQQLRHNKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLTNANALKTIGFLQQDEVYELLEA YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRVRELNQIICDSFKLDTLNETE RDNLQSIDKYFSVCNGLIEVKFSQAFIDKRQVIRMFKLIAENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAI LAHPKGLRKCLGLMHRYGVLAAYCSQWHAIEGQMQFDMHNAFTVDEHTFKAIQYIDSFALNKKNSLTYSIYQNIGNRFAL VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTSLIYWLVANQDVLISAIQTQDISDPDVIKHLAKAIGSQGKL NALFLFTIADMMATNESYWNDWQESQLTQLYMAVRETLKQGIENIFEVRTVIRENQTDGRAELLKLGVEEERLNRFWHSL PNNFFSGNSLEDIVEITQGILAGEAGTTRVLVGKNGDNGFTSIFVYTKDRPKLFVDLFKTLASSKLKVKDAQMMQTKNGQ VLEIIKVLDHKDESIDDEPRIEQIVKRIYRAVDQKDRPRKLMTPRALKNFDSPPVVTVLHTTKKNRALLKVNTLDDPMYL EQICNLLSERNLSIHSARISTLGECTENVFLVSNAEKTSFGHDEQLKLVDIIEEEIA
Sequences:
>Translated_857_residues MSSIVELNSLSELKFHIKTFDEKLNEQFLILPVQTLLKRRAKHIDEMLVSLWKMYNLHNTSMSLNAVGGYGRRALHPRSD IDLAIIIEQELTPHQQEQLSLFLTRLWDFGLDIGQTVRTLCESIESAKSDITIATNLLDIRCLVGPKKHAQNIKEQLYQN ELWTSLSFYDAKMAEQQLRHNKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLTNANALKTIGFLQQDEVYELLEA YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRVRELNQIICDSFKLDTLNETE RDNLQSIDKYFSVCNGLIEVKFSQAFIDKRQVIRMFKLIAENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAI LAHPKGLRKCLGLMHRYGVLAAYCSQWHAIEGQMQFDMHNAFTVDEHTFKAIQYIDSFALNKKNSLTYSIYQNIGNRFAL VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTSLIYWLVANQDVLISAIQTQDISDPDVIKHLAKAIGSQGKL NALFLFTIADMMATNESYWNDWQESQLTQLYMAVRETLKQGIENIFEVRTVIRENQTDGRAELLKLGVEEERLNRFWHSL PNNFFSGNSLEDIVEITQGILAGEAGTTRVLVGKNGDNGFTSIFVYTKDRPKLFVDLFKTLASSKLKVKDAQMMQTKNGQ VLEIIKVLDHKDESIDDEPRIEQIVKRIYRAVDQKDRPRKLMTPRALKNFDSPPVVTVLHTTKKNRALLKVNTLDDPMYL EQICNLLSERNLSIHSARISTLGECTENVFLVSNAEKTSFGHDEQLKLVDIIEEEIA >Mature_856_residues SSIVELNSLSELKFHIKTFDEKLNEQFLILPVQTLLKRRAKHIDEMLVSLWKMYNLHNTSMSLNAVGGYGRRALHPRSDI DLAIIIEQELTPHQQEQLSLFLTRLWDFGLDIGQTVRTLCESIESAKSDITIATNLLDIRCLVGPKKHAQNIKEQLYQNE LWTSLSFYDAKMAEQQLRHNKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLTNANALKTIGFLQQDEVYELLEAY DFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRVRELNQIICDSFKLDTLNETER DNLQSIDKYFSVCNGLIEVKFSQAFIDKRQVIRMFKLIAENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAIL AHPKGLRKCLGLMHRYGVLAAYCSQWHAIEGQMQFDMHNAFTVDEHTFKAIQYIDSFALNKKNSLTYSIYQNIGNRFALV FATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTSLIYWLVANQDVLISAIQTQDISDPDVIKHLAKAIGSQGKLN ALFLFTIADMMATNESYWNDWQESQLTQLYMAVRETLKQGIENIFEVRTVIRENQTDGRAELLKLGVEEERLNRFWHSLP NNFFSGNSLEDIVEITQGILAGEAGTTRVLVGKNGDNGFTSIFVYTKDRPKLFVDLFKTLASSKLKVKDAQMMQTKNGQV LEIIKVLDHKDESIDDEPRIEQIVKRIYRAVDQKDRPRKLMTPRALKNFDSPPVVTVLHTTKKNRALLKVNTLDDPMYLE QICNLLSERNLSIHSARISTLGECTENVFLVSNAEKTSFGHDEQLKLVDIIEEEIA
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=850, Percent_Identity=33.1764705882353, Blast_Score=487, Evalue=1e-138,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 98210; Mature: 98079
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSIVELNSLSELKFHIKTFDEKLNEQFLILPVQTLLKRRAKHIDEMLVSLWKMYNLHNT CCCCHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCC SMSLNAVGGYGRRALHPRSDIDLAIIIEQELTPHQQEQLSLFLTRLWDFGLDIGQTVRTL CEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH CESIESAKSDITIATNLLDIRCLVGPKKHAQNIKEQLYQNELWTSLSFYDAKMAEQQLRH HHHHHHHCCCEEEEEHHEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLTNANALKTIGFLQQDEVYELLEA HHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHH YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRV HHHHHHHHHHHHHHHHCCHHHEEEHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH RELNQIICDSFKLDTLNETERDNLQSIDKYFSVCNGLIEVKFSQAFIDKRQVIRMFKLIA HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAILAHPKGLRKCLGLMHRYGVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AAYCSQWHAIEGQMQFDMHNAFTVDEHTFKAIQYIDSFALNKKNSLTYSIYQNIGNRFAL HHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCHHHHH VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTSLIYWLVANQDVLISAIQTQD HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHEEEHHHCC ISDPDVIKHLAKAIGSQGKLNALFLFTIADMMATNESYWNDWQESQLTQLYMAVRETLKQ CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHH GIENIFEVRTVIRENQTDGRAELLKLGVEEERLNRFWHSLPNNFFSGNSLEDIVEITQGI HHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LAGEAGTTRVLVGKNGDNGFTSIFVYTKDRPKLFVDLFKTLASSKLKVKDAQMMQTKNGQ HCCCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHCCCCC VLEIIKVLDHKDESIDDEPRIEQIVKRIYRAVDQKDRPRKLMTPRALKNFDSPPVVTVLH HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHCCCCCCEEEEEE TTKKNRALLKVNTLDDPMYLEQICNLLSERNLSIHSARISTLGECTENVFLVSNAEKTSF ECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC GHDEQLKLVDIIEEEIA CCCCCHHHHHHHHHHCC >Mature Secondary Structure SSIVELNSLSELKFHIKTFDEKLNEQFLILPVQTLLKRRAKHIDEMLVSLWKMYNLHNT CCCHHHCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCC SMSLNAVGGYGRRALHPRSDIDLAIIIEQELTPHQQEQLSLFLTRLWDFGLDIGQTVRTL CEEEECCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHH CESIESAKSDITIATNLLDIRCLVGPKKHAQNIKEQLYQNELWTSLSFYDAKMAEQQLRH HHHHHHHCCCEEEEEHHEEEHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH NKALNTALYLEPNLKNNPGGLRDVHTIMWIAQKHFSLTNANALKTIGFLQQDEVYELLEA HHHHCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHH YDFICRVRWALHCVTQSAQDVLLFEHQAGVAEFMQFGQGDNSQLAIERMMRQLFRAMTRV HHHHHHHHHHHHHHHHCCHHHEEEHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH RELNQIICDSFKLDTLNETERDNLQSIDKYFSVCNGLIEVKFSQAFIDKRQVIRMFKLIA HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ENDNIDGIAPQTLRLLRQTRRGLLGELQDYQGCREEFLAILAHPKGLRKCLGLMHRYGVL CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH AAYCSQWHAIEGQMQFDMHNAFTVDEHTFKAIQYIDSFALNKKNSLTYSIYQNIGNRFAL HHHHHHHHHCCCEEEEECCCCEECCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHCHHHHH VFATLCHHLSGKQAIENSELSAIQAKELAEEHLLKASTTSLIYWLVANQDVLISAIQTQD HHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHEEEHHHCC ISDPDVIKHLAKAIGSQGKLNALFLFTIADMMATNESYWNDWQESQLTQLYMAVRETLKQ CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHCCHHHHHHHHHHHHHHHHHHH GIENIFEVRTVIRENQTDGRAELLKLGVEEERLNRFWHSLPNNFFSGNSLEDIVEITQGI HHHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH LAGEAGTTRVLVGKNGDNGFTSIFVYTKDRPKLFVDLFKTLASSKLKVKDAQMMQTKNGQ HCCCCCCEEEEEECCCCCCEEEEEEEECCCCHHHHHHHHHHHCCCEEEHHHHHHHCCCCC VLEIIKVLDHKDESIDDEPRIEQIVKRIYRAVDQKDRPRKLMTPRALKNFDSPPVVTVLH HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHCCCHHHHCCCCCCEEEEEE TTKKNRALLKVNTLDDPMYLEQICNLLSERNLSIHSARISTLGECTENVFLVSNAEKTSF ECCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC GHDEQLKLVDIIEEEIA CCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA