| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625184
Identifier: 167625184
GI number: 167625184
Start: 3991804
End: 3992241
Strand: Reverse
Name: 167625184
Synonym: Shal_3272
Alternate gene names: NA
Gene position: 3992241-3991804 (Counterclockwise)
Preceding gene: 167625185
Following gene: 167625183
Centisome position: 76.38
GC content: 47.72
Gene sequence:
>438_bases ATGACTGAAGTAACAGCAGCGTACAAAGAGCGCGCCGAACAAGTGGCATTGAACGTGTGTAACACCGTAATGCCGATGAG CGATATTCCTGAAGGTTTGTTCGAAGCCTACGCAAACCTTTGCAACGAGCTAATTGAAGATACCGATCTTAAGTTCAGCG CAGGTTGGGACGCATTACCAGCCAGTGCTAAGAACCTACTGCCGAAAGAAGATTTCCACGGTTTTTACATCGCAAACGCT TGGTTCCAACTCAGTCGCGTAGCGCAAGACATTGCCGATATGGCTGAGACCGACGATGAAATTGCCGAGAAAGAGTACAA TGGCATCTTCACTCGTTTGGCAGATGCATCGCTTAAAGAAAGCGTACGTAAGCTTAAGAAAGCCCGCACCGACCGTTCGA TGCTTAACAGCATTAAGTCGGTAATCGAAGGCAAGTAA
Upstream 100 bases:
>100_bases TAAATCGTATTGAATAAAGGAGGCGCCGATATTTTGTAGACTCAAAATATAGCGCCTGCGAGTAGAAATATTTTTAGAGA CATCTTGTAGAGAGAAAGTG
Downstream 100 bases:
>100_bases TTACTTATGTTCTAGGCTGTTTTAGCACGCTAAAAAAGGCTATGGGAAACCATAGCCTTTTTTGTTGCTGTGCTGAACCT TGGTATTTGGTGAGGGCGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 145; Mature: 144
Protein sequence:
>145_residues MTEVTAAYKERAEQVALNVCNTVMPMSDIPEGLFEAYANLCNELIEDTDLKFSAGWDALPASAKNLLPKEDFHGFYIANA WFQLSRVAQDIADMAETDDEIAEKEYNGIFTRLADASLKESVRKLKKARTDRSMLNSIKSVIEGK
Sequences:
>Translated_145_residues MTEVTAAYKERAEQVALNVCNTVMPMSDIPEGLFEAYANLCNELIEDTDLKFSAGWDALPASAKNLLPKEDFHGFYIANA WFQLSRVAQDIADMAETDDEIAEKEYNGIFTRLADASLKESVRKLKKARTDRSMLNSIKSVIEGK >Mature_144_residues TEVTAAYKERAEQVALNVCNTVMPMSDIPEGLFEAYANLCNELIEDTDLKFSAGWDALPASAKNLLPKEDFHGFYIANAW FQLSRVAQDIADMAETDDEIAEKEYNGIFTRLADASLKESVRKLKKARTDRSMLNSIKSVIEGK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16229; Mature: 16098
Theoretical pI: Translated: 4.44; Mature: 4.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEVTAAYKERAEQVALNVCNTVMPMSDIPEGLFEAYANLCNELIEDTDLKFSAGWDALP CCCHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ASAKNLLPKEDFHGFYIANAWFQLSRVAQDIADMAETDDEIAEKEYNGIFTRLADASLKE CHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SVRKLKKARTDRSMLNSIKSVIEGK HHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TEVTAAYKERAEQVALNVCNTVMPMSDIPEGLFEAYANLCNELIEDTDLKFSAGWDALP CCHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC ASAKNLLPKEDFHGFYIANAWFQLSRVAQDIADMAETDDEIAEKEYNGIFTRLADASLKE CHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH SVRKLKKARTDRSMLNSIKSVIEGK HHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA