| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167625155
Identifier: 167625155
GI number: 167625155
Start: 3948307
End: 3948654
Strand: Reverse
Name: 167625155
Synonym: Shal_3243
Alternate gene names: NA
Gene position: 3948654-3948307 (Counterclockwise)
Preceding gene: 167625157
Following gene: 167625154
Centisome position: 75.54
GC content: 43.97
Gene sequence:
>348_bases ATGAAAACAAGTGCATATTTAGACGCTATGAGCATTGTGCGGTGGAAGAAAGCCGTTCCTCCATTTGAAGTGTTGACTGT GTTGGTTAATCCGCTGCGGATCAAAGATGTTGATAGCCCAATCATTAGCACGGTACTTGGTTTACTCGGAGTCGATTTAG CTCATTGCCGTTTTGCTGTTAGAGTCGAGCCAGGAACTAAGGTGATTTGGGATATGCGTGGTAAGCAAGCCGTCGTTAAT GACAATACTTTAGTTTCTGCGCCTATCAATGAGCTTGAGAATAATGCAGAGGCTAAAAAGACCCTGTGGCTTAATATGCA GCCTTTTATGGCTCAAAAGGACGCTTAG
Upstream 100 bases:
>100_bases CAGTGACTTTATCTTGGCAGCTTCATTTGAGTTGCTTCACTTAGACATAGACTAGCTGCTATGCTCTCTATCGTTTTAAA TCCTTTGTGGTCGAGTCTTA
Downstream 100 bases:
>100_bases TGGAAATCATACTGCTAAACGATGAAATGTCCTCACAGATGGCTGCTATAGCAGCTAAAGCGCATAGTCATCCTATGAGT GAGTCTACGATTAAAAGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 115; Mature: 115
Protein sequence:
>115_residues MKTSAYLDAMSIVRWKKAVPPFEVLTVLVNPLRIKDVDSPIISTVLGLLGVDLAHCRFAVRVEPGTKVIWDMRGKQAVVN DNTLVSAPINELENNAEAKKTLWLNMQPFMAQKDA
Sequences:
>Translated_115_residues MKTSAYLDAMSIVRWKKAVPPFEVLTVLVNPLRIKDVDSPIISTVLGLLGVDLAHCRFAVRVEPGTKVIWDMRGKQAVVN DNTLVSAPINELENNAEAKKTLWLNMQPFMAQKDA >Mature_115_residues MKTSAYLDAMSIVRWKKAVPPFEVLTVLVNPLRIKDVDSPIISTVLGLLGVDLAHCRFAVRVEPGTKVIWDMRGKQAVVN DNTLVSAPINELENNAEAKKTLWLNMQPFMAQKDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12803; Mature: 12803
Theoretical pI: Translated: 9.23; Mature: 9.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTSAYLDAMSIVRWKKAVPPFEVLTVLVNPLRIKDVDSPIISTVLGLLGVDLAHCRFAV CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCHHHHCEEEE RVEPGTKVIWDMRGKQAVVNDNTLVSAPINELENNAEAKKTLWLNMQPFMAQKDA EECCCCEEEEECCCCEEEECCCEEEECCHHHHHCCCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure MKTSAYLDAMSIVRWKKAVPPFEVLTVLVNPLRIKDVDSPIISTVLGLLGVDLAHCRFAV CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCEEECCCCCHHHHHHHHHHCCHHHHCEEEE RVEPGTKVIWDMRGKQAVVNDNTLVSAPINELENNAEAKKTLWLNMQPFMAQKDA EECCCCEEEEECCCCEEEECCCEEEECCHHHHHCCCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA