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The map label for this gene is nqrB [H]

Identifier: 167625098

GI number: 167625098

Start: 3889991

End: 3891190

Strand: Reverse

Name: nqrB [H]

Synonym: Shal_3186

Alternate gene names: 167625098

Gene position: 3891190-3889991 (Counterclockwise)

Preceding gene: 167625099

Following gene: 167625097

Centisome position: 74.45

GC content: 47.83

Gene sequence:

>1200_bases
ATGGGCTTAAAACAGTTTTTCGAAAATATTGAACCGCAATTTGAAAAAGGCGGTAAATATGAGAAGTTTTATGCGCTCTT
TGAAGCTGCATATACGGTGTTTTATACGCCGGGTCTGGTGAACAAGGGGGCAACCCATGTTCGTGATAATCTCGACCTGA
AGCGTATGATGATCATGGTGTGGGCTTGCGTATTTCCAGCTATGTTTGTCGGTATGTATAATATCGGACTACAGGCTCAA
ATTGCGTTAGCGAGTGGCTTTGGAACACCAGATGTTTGGCAGGTCGGCCTGTTTGGGTTGTTTGGTACCGAGTTGACAGC
AAGCTCCGGTATCGCTGCCTTAATGTGGTATGGCGCTTGTTTCTTCCTACCTATCTATGCAACAGCGTTTGCCGTAGGTG
GCTTCTGGGAAGTGCTATTTGCTTCGGTTCGAGGACATGAAGTTAACGAAGGTTTCTTTGTCACTTCAATCCTGTTTGCA
CTGACTCTACCGCCATCGATTCCACTTTGGATGGTGGCATTGGGTATCACCTTTGGTGTTGTTGTCGCTAAGGAAATCTT
CGGTGGAACTGGGCGTAACTTCCTCAACCCAGCACTTGCTGGTCGTGCTTTTCTATTCTTCGCGTATCCGTTAAGTATGT
CGGGTGATACCTCTTGGGTCATTGCCGATGGCTACTCTGGTGCCACGGCACTTAGCCAAGCGGCTCAAGGTACCCTTGAG
CTTGGCATTAACCAAGATTGGTGGGATAACTTCCTCGGCTTTATTCCTGGTTCGGTCGGTGAGGTTTCAACCTTAGCCCT
GCTACTTGGTGGTGCGGTTATCGTCTATATGCGAATCGCTTCATGGCGCATCATAGCCGGTGTGATGGTCGGTATGATTG
CCGTCTCAACGCTCCTCAATGTAATTGGTAGTGACACAAACCCTATGTTTGCAATGCCTTGGTACTGGCACTTGGTACTC
GGTGGTTTTGCCTTCGGTATGATGTTTATGGCAACCGACCCTGTATCGGCCTCATTTACCAATAAGGCAAAATGGAGTTA
TGGGATCTTGATTGGTGCAATGGCGATATTTATTCGTGTCATTAACCCAGCATTCCCAGAAGGTATGATGTTGGCCATTC
TGTTTGCCAACCTGTTTGCACCGCTGTTTGACCATTTTGTGGTTCAGGCAAATATCAAGCGGAGGATCGCCCGTGGCTAG

Upstream 100 bases:

>100_bases
ATGAAGAAGATTTAGCACTGTGTACTGTCGTATGCCCAGGTAAGTATGATTATGCAATTTATCTGCGTGACTGTTTAGAT
ACGATCGTGAGGGAAGGCTA

Downstream 100 bases:

>100_bases
TAATAAAGATTCGTTCGGCAGAACTCTCTTTGTGGTTGTCGGTTTATGCTTTATCTGTTCGGTTTTTGTATCAACCGCAG
CGGTATTGCTACGACCAATT

Product: Na(+)-translocating NADH-quinone reductase subunit B

Products: NA

Alternate protein names: Na(+)-NQR subunit B; Na(+)-translocating NQR subunit B; NQR complex subunit B; NQR-1 subunit B [H]

Number of amino acids: Translated: 399; Mature: 398

Protein sequence:

>399_residues
MGLKQFFENIEPQFEKGGKYEKFYALFEAAYTVFYTPGLVNKGATHVRDNLDLKRMMIMVWACVFPAMFVGMYNIGLQAQ
IALASGFGTPDVWQVGLFGLFGTELTASSGIAALMWYGACFFLPIYATAFAVGGFWEVLFASVRGHEVNEGFFVTSILFA
LTLPPSIPLWMVALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPLSMSGDTSWVIADGYSGATALSQAAQGTLE
LGINQDWWDNFLGFIPGSVGEVSTLALLLGGAVIVYMRIASWRIIAGVMVGMIAVSTLLNVIGSDTNPMFAMPWYWHLVL
GGFAFGMMFMATDPVSASFTNKAKWSYGILIGAMAIFIRVINPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIARG

Sequences:

>Translated_399_residues
MGLKQFFENIEPQFEKGGKYEKFYALFEAAYTVFYTPGLVNKGATHVRDNLDLKRMMIMVWACVFPAMFVGMYNIGLQAQ
IALASGFGTPDVWQVGLFGLFGTELTASSGIAALMWYGACFFLPIYATAFAVGGFWEVLFASVRGHEVNEGFFVTSILFA
LTLPPSIPLWMVALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPLSMSGDTSWVIADGYSGATALSQAAQGTLE
LGINQDWWDNFLGFIPGSVGEVSTLALLLGGAVIVYMRIASWRIIAGVMVGMIAVSTLLNVIGSDTNPMFAMPWYWHLVL
GGFAFGMMFMATDPVSASFTNKAKWSYGILIGAMAIFIRVINPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIARG
>Mature_398_residues
GLKQFFENIEPQFEKGGKYEKFYALFEAAYTVFYTPGLVNKGATHVRDNLDLKRMMIMVWACVFPAMFVGMYNIGLQAQI
ALASGFGTPDVWQVGLFGLFGTELTASSGIAALMWYGACFFLPIYATAFAVGGFWEVLFASVRGHEVNEGFFVTSILFAL
TLPPSIPLWMVALGITFGVVVAKEIFGGTGRNFLNPALAGRAFLFFAYPLSMSGDTSWVIADGYSGATALSQAAQGTLEL
GINQDWWDNFLGFIPGSVGEVSTLALLLGGAVIVYMRIASWRIIAGVMVGMIAVSTLLNVIGSDTNPMFAMPWYWHLVLG
GFAFGMMFMATDPVSASFTNKAKWSYGILIGAMAIFIRVINPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIARG

Specific function: NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm. NqrA to nqrE are probably involved in the second step, the conversion of ubisemiqui

COG id: COG1805

COG function: function code C; Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrB

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrB/rnfD family [H]

Homologues:

Organism=Escherichia coli, GI1787917, Length=325, Percent_Identity=29.5384615384615, Blast_Score=105, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010966
- InterPro:   IPR004338 [H]

Pfam domain/function: PF03116 NQR2_RnfD_RnfE [H]

EC number: NA

Molecular weight: Translated: 43496; Mature: 43364

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00089 RIBORED_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLKQFFENIEPQFEKGGKYEKFYALFEAAYTVFYTPGLVNKGATHVRDNLDLKRMMIMV
CCHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHEECCCCCCCCCHHHHCCCCHHHHHHHH
WACVFPAMFVGMYNIGLQAQIALASGFGTPDVWQVGLFGLFGTELTASSGIAALMWYGAC
HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHH
FFLPIYATAFAVGGFWEVLFASVRGHEVNEGFFVTSILFALTLPPSIPLWMVALGITFGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VVAKEIFGGTGRNFLNPALAGRAFLFFAYPLSMSGDTSWVIADGYSGATALSQAAQGTLE
HHHHHHHCCCCCHHCCHHHHHHEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCEE
LGINQDWWDNFLGFIPGSVGEVSTLALLLGGAVIVYMRIASWRIIAGVMVGMIAVSTLLN
ECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTNKAKWSYGILIGAMAIFIRV
HHCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
INPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIARG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GLKQFFENIEPQFEKGGKYEKFYALFEAAYTVFYTPGLVNKGATHVRDNLDLKRMMIMV
CHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHHEECCCCCCCCCHHHHCCCCHHHHHHHH
WACVFPAMFVGMYNIGLQAQIALASGFGTPDVWQVGLFGLFGTELTASSGIAALMWYGAC
HHHHHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHCCHHHCCCCHHHHHHHHHH
FFLPIYATAFAVGGFWEVLFASVRGHEVNEGFFVTSILFALTLPPSIPLWMVALGITFGV
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
VVAKEIFGGTGRNFLNPALAGRAFLFFAYPLSMSGDTSWVIADGYSGATALSQAAQGTLE
HHHHHHHCCCCCHHCCHHHHHHEEEEEEEEECCCCCCCEEEECCCCCHHHHHHHHCCCEE
LGINQDWWDNFLGFIPGSVGEVSTLALLLGGAVIVYMRIASWRIIAGVMVGMIAVSTLLN
ECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTNKAKWSYGILIGAMAIFIRV
HHCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
INPAFPEGMMLAILFANLFAPLFDHFVVQANIKRRIARG
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA