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The map label for this gene is rbfA

Identifier: 167625058

GI number: 167625058

Start: 3840883

End: 3841311

Strand: Reverse

Name: rbfA

Synonym: Shal_3146

Alternate gene names: 167625058

Gene position: 3841311-3840883 (Counterclockwise)

Preceding gene: 167625059

Following gene: 167625057

Centisome position: 73.49

GC content: 43.59

Gene sequence:

>429_bases
ATGGCAAAAGAATTTAGTCGTACACGTCGTATTGCACAGCAGCTTCAACAAGAGCTAGCACAGGTGTTACAGCGTGATAT
GAAAGACCCAAGAATTGGGTTTGTAACGGTTAATGATGTCGATGTTTCTCGTGATTTAAGCTACGCAAAAGTGTATGTGA
CTTTCTTCGAAGAAGATGAAAAACTTGTCGAACAGAAAGTGGCTGCATTAGATGCTGCTGCGGGTTATATCCGTTCATTG
GTTGCTGGTCGTATGAAGTTGCGCGTAATGCCTGAGCTACGTTTTATCTACGATAGCTCGTTAGTTGAAGGTATGCGCAT
GTCTAACTTAGTTAGTCGCGTGATCAGTAATGATGAAGCAAAACAGAAGCAGCATGGCGTAGAAACTGACGCTGAACAAG
GCGAAACCAAGGACGAGGGCGATAAGTAA

Upstream 100 bases:

>100_bases
GAAGTCTTCGAGACCGTTGAGATAGCACGCACCTTGTAATCTATCTTATTATTTTATAAGGGCGGCGTTAGCCGCCCTTA
ATATTTATGGCAAATATATT

Downstream 100 bases:

>100_bases
TGGCACGTCGTTCTCGCGGCCGTTTTATCGACGGTATTTTACTGTTAGATAAAGACACCGGTATGAGCTCTAACTTTGCA
TTACAAAGAGTGAAACGCTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSL
VAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSRVISNDEAKQKQHGVETDAEQGETKDEGDK

Sequences:

>Translated_142_residues
MAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSL
VAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSRVISNDEAKQKQHGVETDAEQGETKDEGDK
>Mature_141_residues
AKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVYVTFFEEDEKLVEQKVAALDAAAGYIRSLV
AGRMKLRVMPELRFIYDSSLVEGMRMSNLVSRVISNDEAKQKQHGVETDAEQGETKDEGDK

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=124, Percent_Identity=56.4516129032258, Blast_Score=145, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SHEHH (B0TQA1)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001675352.1
- ProteinModelPortal:   B0TQA1
- SMR:   B0TQA1
- GeneID:   5906222
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_3146
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK00521
- BioCyc:   SHAL458817:SHAL_3146-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 16204; Mature: 16072

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVYVTFFEEDE
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
KLVEQKVAALDAAAGYIRSLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSRVISNDEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KQKQHGVETDAEQGETKDEGDK
HHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKEFSRTRRIAQQLQQELAQVLQRDMKDPRIGFVTVNDVDVSRDLSYAKVYVTFFEEDE
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHH
KLVEQKVAALDAAAGYIRSLVAGRMKLRVMPELRFIYDSSLVEGMRMSNLVSRVISNDEA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
KQKQHGVETDAEQGETKDEGDK
HHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA