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The map label for this gene is yjcD [H]

Identifier: 167625027

GI number: 167625027

Start: 3799220

End: 3800578

Strand: Reverse

Name: yjcD [H]

Synonym: Shal_3115

Alternate gene names: 167625027

Gene position: 3800578-3799220 (Counterclockwise)

Preceding gene: 167625028

Following gene: 167625024

Centisome position: 72.71

GC content: 48.57

Gene sequence:

>1359_bases
ATGAAGTCTGAACAGACTCTTGCAAGCTCTGCTACTCCTGCCGATTCAGTCTTGGATCGCTACTTCAAAATATCAGCTCG
TGGAAGCACATTAAGACGCGAAGTTATCGCGGGCTTAACCACGTTTCTTGCCATGGTGTATTCGGTGATTGTGGTGCCGA
ATATGTTAGGAGCAGCGGGGTTCGATACTGGTGCGGTATTTATTGCCACCTGTTTAATCGCCGCGTTTGGCTCCTTGCTA
ATGGGCTTGTGGGCAAACCTACCAATGGCTATCGGTTGTGCCATTTCACTAACGGCATTTACCGCATTTAGTATGGTGCT
TGGCCAAGGGATCTCAATCCCGGTCACTTTGGGCGCCATCTTCTTGATGGGTATCGTGTTTACTCTTGTGAGTGTTACAG
GCGTTCGTCAGTGGGTACTGACTAATTTACCTAAGGGTATTGCTCACGGCACAGGTATTGGTATCGGCTTATTTCTGTTA
CTGATTGCCACTAACAGTGTGCAGTTGATTGTGGCTAACGACACCGGTTTACCTGTCGCGCTTGGTAATATTCATAGTCT
ACCAGTTATCGCGACCATTATTGGCCTAGCCGCAACTATCGGCCTTGAGCGCCGCGGCATGCCGGGTGGCATCTTATTGG
TGATCGTTGCGCTGTCGGTATTTGGATTAATATTTGATCCTGCGGTTAAGTACCAAGGTCTTTTTGCTTTTCCTGATCTG
ATGTCAGATGAGTCGCTTATCGGCCAGCTCGATATCATGGGCGCACTAAATCCAGTCGTGTTACCGATTGTTCTGGCATT
GGTGATGACAGCTATTTTTGATGCAACAGGTACGATCCGCGCCGTAGCTGGTCAAGCAGAGCTGCTCGATGATAAAGACA
ATATTATTGGTGGTGGCAAGGCATTAACCTCTGATTCGGTAAGCAGTATCTTTGCTGGCGCAGTCGGCGGCGCTCCTGCC
GCTGTTTATATCGAGTCTGCAGCGGGTACCGCGGCTGGTGGTAAAACTGGCCTAACGGCGACGATTGTCGGTGTGTTATT
CCTGCTGATGATGTTTCTTGCACCACTTAGCTACTTAGTACCGGCATACGCAACCGCGCCAGCACTAATGTATGTGGGTC
TATTGATGCTAAGCAACGTGACTAAGCTTGATTTTAACGACAAAGTCGATGCTATGGCAGGTCTAACCTGCGCAGTATTT
ATCATTCTCAGCTGTAATATTGTGACCGGTATTATGCTGGGTTTTGTGACCTTAGTTATTGGCCGACTATGTAGCGGTGA
ATGGCGTCAAATTAAGCCGGGGGTACTGGCTATCACAGTCGGCTTAGTGGCGTTTTATATGGGTGGTTGGGCGATTTAA

Upstream 100 bases:

>100_bases
TCACCCGACATTTGTCGTCGGGGCTCTACCTGCCATAGCCAAGTGGCCAATTGAATTCAATTGGTTAACCATATTTAAGA
GATCAAAAGGTATCACTACT

Downstream 100 bases:

>100_bases
GTTCAATTGCCGATAGCCTTACCATAAAAAGCCAGTCATTGATGACTGGCTTTTTTGTCTGCGTTTAATAGCGATTAGCG
TTTTATAGACCTGAGAGAGT

Product: xanthine/uracil/vitamin C permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 452; Mature: 452

Protein sequence:

>452_residues
MKSEQTLASSATPADSVLDRYFKISARGSTLRREVIAGLTTFLAMVYSVIVVPNMLGAAGFDTGAVFIATCLIAAFGSLL
MGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAIFLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLL
LIATNSVQLIVANDTGLPVALGNIHSLPVIATIIGLAATIGLERRGMPGGILLVIVALSVFGLIFDPAVKYQGLFAFPDL
MSDESLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQAELLDDKDNIIGGGKALTSDSVSSIFAGAVGGAPA
AVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVF
IILSCNIVTGIMLGFVTLVIGRLCSGEWRQIKPGVLAITVGLVAFYMGGWAI

Sequences:

>Translated_452_residues
MKSEQTLASSATPADSVLDRYFKISARGSTLRREVIAGLTTFLAMVYSVIVVPNMLGAAGFDTGAVFIATCLIAAFGSLL
MGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAIFLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLL
LIATNSVQLIVANDTGLPVALGNIHSLPVIATIIGLAATIGLERRGMPGGILLVIVALSVFGLIFDPAVKYQGLFAFPDL
MSDESLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQAELLDDKDNIIGGGKALTSDSVSSIFAGAVGGAPA
AVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVF
IILSCNIVTGIMLGFVTLVIGRLCSGEWRQIKPGVLAITVGLVAFYMGGWAI
>Mature_452_residues
MKSEQTLASSATPADSVLDRYFKISARGSTLRREVIAGLTTFLAMVYSVIVVPNMLGAAGFDTGAVFIATCLIAAFGSLL
MGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAIFLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLL
LIATNSVQLIVANDTGLPVALGNIHSLPVIATIIGLAATIGLERRGMPGGILLVIVALSVFGLIFDPAVKYQGLFAFPDL
MSDESLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQAELLDDKDNIIGGGKALTSDSVSSIFAGAVGGAPA
AVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLVPAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVF
IILSCNIVTGIMLGFVTLVIGRLCSGEWRQIKPGVLAITVGLVAFYMGGWAI

Specific function: Unknown

COG id: COG2252

COG function: function code R; Permeases

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xanthine/uracil permease family. AzgA purine transporter (TC 2.A.1.40) subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790499, Length=439, Percent_Identity=73.120728929385, Blast_Score=621, Evalue=1e-179,
Organism=Escherichia coli, GI48994909, Length=455, Percent_Identity=72.3076923076923, Blast_Score=620, Evalue=1e-179,
Organism=Escherichia coli, GI87082309, Length=432, Percent_Identity=38.6574074074074, Blast_Score=278, Evalue=4e-76,
Organism=Escherichia coli, GI1790150, Length=438, Percent_Identity=38.5844748858447, Blast_Score=270, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006043 [H]

Pfam domain/function: PF00860 Xan_ur_permease [H]

EC number: NA

Molecular weight: Translated: 46527; Mature: 46527

Theoretical pI: Translated: 5.27; Mature: 5.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSEQTLASSATPADSVLDRYFKISARGSTLRREVIAGLTTFLAMVYSVIVVPNMLGAAG
CCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FDTGAVFIATCLIAAFGSLLMGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
FLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLLLIATNSVQLIVANDTGLPVA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEE
LGNIHSLPVIATIIGLAATIGLERRGMPGGILLVIVALSVFGLIFDPAVKYQGLFAFPDL
ECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC
MSDESLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQAELLDDKDNIIGGGK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCCCCCCC
ALTSDSVSSIFAGAVGGAPAAVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLV
CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLCSGEWRQIKPGVLAITVGLVAFYMGGWAI
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKSEQTLASSATPADSVLDRYFKISARGSTLRREVIAGLTTFLAMVYSVIVVPNMLGAAG
CCCCHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
FDTGAVFIATCLIAAFGSLLMGLWANLPMAIGCAISLTAFTAFSMVLGQGISIPVTLGAI
CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
FLMGIVFTLVSVTGVRQWVLTNLPKGIAHGTGIGIGLFLLLIATNSVQLIVANDTGLPVA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHCCCEEEEEECCCCCCEE
LGNIHSLPVIATIIGLAATIGLERRGMPGGILLVIVALSVFGLIFDPAVKYQGLFAFPDL
ECCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEECCCC
MSDESLIGQLDIMGALNPVVLPIVLALVMTAIFDATGTIRAVAGQAELLDDKDNIIGGGK
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHCCCCCCCCCCCC
ALTSDSVSSIFAGAVGGAPAAVYIESAAGTAAGGKTGLTATIVGVLFLLMMFLAPLSYLV
CCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
PAYATAPALMYVGLLMLSNVTKLDFNDKVDAMAGLTCAVFIILSCNIVTGIMLGFVTLVI
HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRLCSGEWRQIKPGVLAITVGLVAFYMGGWAI
HHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]