| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624962
Identifier: 167624962
GI number: 167624962
Start: 3718584
End: 3719123
Strand: Reverse
Name: 167624962
Synonym: Shal_3049
Alternate gene names: NA
Gene position: 3719123-3718584 (Counterclockwise)
Preceding gene: 167624967
Following gene: 167624959
Centisome position: 71.15
GC content: 44.63
Gene sequence:
>540_bases ATGACAGTTAAAACTATAATGGCAACGCTTGTATTGAGCGCCTTGTCTATCAATGCTCATGCGACAGATTTTACATTTGG CCTCAATGACGACACCTTGTCGACTGAGTTACAATTTGATCTCAATAAAGATGTTAATGGCTCTGTTGAGTATATCTATG CCGATAAAGGTGGGCAGATGTTATCTGGTGCGCTGCATATTGCTCATGATGCGGGAGCTCACCACTTTGAGCTGGGGGCT AAGTTTTCTCAGGTGTGGTCAAAGAAGAGCCAAAACGGTAACTTCGTCGGAATTGGCGGTCGTTATGCGATGCACTTAGG TTCTAATGTTTCTATCCATGGTTCAGGCTACTATTCGCCATCGGTGCTGTCGTTTGGCGATATTGACGGCTCTTGGCAGT TAGATGGTCGAGTGCAGTATAACTTGAACCCTGCGTTAGCCCTGTTTGTAGGCTACCGTGATATTCGTTTGCAGTATGAC AATGCATCAAATACCAGCTTAGATTCTGGCTTATACCTAGGTGCTAAAGCCTCATTCTAA
Upstream 100 bases:
>100_bases CGGTGTTTATTTAAATGCACTGTTTGAGATCAGGTTTATATAAAAAAGCGTCAGGGCTTTGTGTATGCTTGCCGAAAGCT TATAAGTTTCGGAATTATCA
Downstream 100 bases:
>100_bases GGTGCATTCGGCCTATTGATACTGGTATTTTGATGTGGTCGAAAGAGCAAAATAAGCTGATAAGCATATAGATAGGCGAG AATATATTGCCAAAAAAAAA
Product: YfaZ family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 179; Mature: 178
Protein sequence:
>179_residues MTVKTIMATLVLSALSINAHATDFTFGLNDDTLSTELQFDLNKDVNGSVEYIYADKGGQMLSGALHIAHDAGAHHFELGA KFSQVWSKKSQNGNFVGIGGRYAMHLGSNVSIHGSGYYSPSVLSFGDIDGSWQLDGRVQYNLNPALALFVGYRDIRLQYD NASNTSLDSGLYLGAKASF
Sequences:
>Translated_179_residues MTVKTIMATLVLSALSINAHATDFTFGLNDDTLSTELQFDLNKDVNGSVEYIYADKGGQMLSGALHIAHDAGAHHFELGA KFSQVWSKKSQNGNFVGIGGRYAMHLGSNVSIHGSGYYSPSVLSFGDIDGSWQLDGRVQYNLNPALALFVGYRDIRLQYD NASNTSLDSGLYLGAKASF >Mature_178_residues TVKTIMATLVLSALSINAHATDFTFGLNDDTLSTELQFDLNKDVNGSVEYIYADKGGQMLSGALHIAHDAGAHHFELGAK FSQVWSKKSQNGNFVGIGGRYAMHLGSNVSIHGSGYYSPSVLSFGDIDGSWQLDGRVQYNLNPALALFVGYRDIRLQYDN ASNTSLDSGLYLGAKASF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19322; Mature: 19191
Theoretical pI: Translated: 6.13; Mature: 6.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVKTIMATLVLSALSINAHATDFTFGLNDDTLSTELQFDLNKDVNGSVEYIYADKGGQM CCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCE LSGALHIAHDAGAHHFELGAKFSQVWSKKSQNGNFVGIGGRYAMHLGSNVSIHGSGYYSP EEEEEEEEECCCCCEEECCCHHHHHHHCCCCCCCEEEECCEEEEEECCEEEEECCCCCCC SVLSFGDIDGSWQLDGRVQYNLNPALALFVGYRDIRLQYDNASNTSLDSGLYLGAKASF CEEEECCCCCCEEECCEEEECCCCEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCC >Mature Secondary Structure TVKTIMATLVLSALSINAHATDFTFGLNDDTLSTELQFDLNKDVNGSVEYIYADKGGQM CHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCE LSGALHIAHDAGAHHFELGAKFSQVWSKKSQNGNFVGIGGRYAMHLGSNVSIHGSGYYSP EEEEEEEEECCCCCEEECCCHHHHHHHCCCCCCCEEEECCEEEEEECCEEEEECCCCCCC SVLSFGDIDGSWQLDGRVQYNLNPALALFVGYRDIRLQYDNASNTSLDSGLYLGAKASF CEEEECCCCCCEEECCEEEECCCCEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA