| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fusA [C]
Identifier: 167624920
GI number: 167624920
Start: 3649836
End: 3651863
Strand: Reverse
Name: fusA [C]
Synonym: Shal_3006
Alternate gene names: 167624920
Gene position: 3651863-3649836 (Counterclockwise)
Preceding gene: 167624926
Following gene: 167624919
Centisome position: 69.87
GC content: 48.08
Gene sequence:
>2028_bases ATGGCTGAATTTACTACCGAGCAGATCCGAAATCTGGCTGTGCTTGGACACACTGGATCTGGAAAATCTTCTCTGTTAGA GGCGCTTCTTTTTCGTGCAGAGGCGATAACATTAAAAGGCAGGGTCGATAAGGGCACTAATCACGCTGATTTCACTGCCC AAGAAAAATCTCACCGCCATAGTTTAGAACCTTCATTCCTCAATCTCGATTACGCCAATCACCACATCAACATCATAGAC ACCCCTGGATTACCTGACTTCTTTGGTCGAGCCTTGTTGCCGTTACCAGGCGTTGAATCTGTTGTTTTGGTGATCCACGC AGGGGTTGGCATAGAGGCGATAACCAAAAGAGCCTTCGAAGCTGCCCGTCGTCAAGGTAAAGCGGTACTCATCGTTATTA ATCATATTGATGGCAATGAGTCGGCGTTAGCGCCTTTGCTACAAACGATTCAAGCACAGTTTGGTCAGCGATGCTTACCC GTTAACTTGCCTAATGTTACTGGTGATGGGGTAGTGGATTGCTATTTGCACTGTGACCCACAAGCTCAAACCGCTTTTAT TGGCGCCGAATGTGCCCGAGATGAATTGGTTGATACCGTGCTTGAAGAAGATGAGCTGTTAATGGAGCTCTATCTTGAGC AGGGCGAATCGTTAACCCCAGAGCAGCTGCATGCTCCACTTGAAACGGCATTACGCTTAGGCAACTTAGTCCCAGTTTGC TTTACCAGTGCCGAAAAAGAGATAGGGATCAGTTCGCTGTTAGAGATCCTTATTAAATTAATGCCTAACCCTCTAGAGGC TAACCCACCGCAATTTGTAAAAGGTTTTGGCGATAACGCTAAAGCTGTCACAGTCAATCAGAATCCTAACGAGCACGTAC TCGCCCACGTATTTAGGGTCGCAGTTGACCCATTCTTTGGGCGTATGGGGGTATTTCGTTTATATCAAGGCACAATCAAT GTGGGGATGAAGCTATATATCGGTCAAGGGCGTAAGCCATTTAAAGTGGCTCACCTGATTAAATTACAAGGTGAGAAGCA TATTGATGTGGCTCAAGCGATACCAGGGAATATCTATGCCATTGCCAAAGTCGAAGAGCTTGAGATCGGTGTGGTGTTGC ACGACAGTCATGATGAAGATGATTTTCACATGCCAGAGAACGCACTACCTCAGCCTATTTTCGGCCTAGCAGTTTCCCCT AAACGACGTGGCGATGAACAAAAGTTATCTGAGGTGTTGAATAAACTTGTGGCAGAAGATCCCAGTTTGCGAGTCACTCG AGGTGAAGCACTGGGGCAAACTCTGCTGCAGGGGCAGGGAGATCTGCATCTGCAAATTGCGCTAGAGAAGGCGCAAACTG TGTTCAATGTGGATATGGAAACCAATATACCTGCGGTGCCATACAGAGAGACCATCTTAGCCGAGGCAAAGTCACGTTAT CGCCATAAGAAACAGTCGGGAGGCTCAGGGCAGTTTGGTGAAGTCGAGTTGATGGTTGAGCCGTTGGCCCGTGGCCAAGG TTTTGAGTTTGTCAGTAAAGTGGTGGGTGGTTCTGTGCCAAGCCAATATATTCCAGCGATAGAGAAAGGCGTGCGCGAAG CCATGTTAGCGGGAGGGGTAGGTGGTTTCCCGATGCAGGATATTAAAGTCACAGTATTAGATGGTAAACATCATAGCGTG GATTCTAAGGAGATAGCGTTTGTCATGGCGGGCAAGCGAGCCTTTATGGAGGCTGTTACCTCGGCACAACCTGTGATCCT TGAGCCTGTCGTTGATATGCAGATCTGCGTAGAGCAGGGCTACGTTGGGGAGATCACCGGTGATATCAGTGCTTCTAGAG GCATGGTGTGCGGCACTCAGGCGCAAACCAATGGTATGGTTGAGGTGAGTGTGGAAGCGCCGCTTGCAAATGTTGCCGAC TATTCTACTCGATTAAAATCGATGACTGGAGGAGAGGGGCAGTTCTCAATGAGCTTTAGCCGTTATGATGTGGTTCCCGA TAGGGTACAGGCTACATTAATGCGTTAA
Upstream 100 bases:
>100_bases CATTACTAGTTTACAGCGGTCTATACTGACTATAATTTGCTCAACTAAGACTGCAAATAGAAAATGGATTGACTAAATAA TGTAAAAAAAGGAGGCCAAG
Downstream 100 bases:
>100_bases TGGGGAGGTTTCGAGGAGTTTGAGCTATTGTGGCACCATTTGAGTTTGTGGCTGTTGTTTTGAATTAAAACAGGCCACAA TAGCCCATATATCTACGTTC
Product: elongation factor G
Products: GDP; phosphate
Alternate protein names: NA
Number of amino acids: Translated: 675; Mature: 674
Protein sequence:
>675_residues MAEFTTEQIRNLAVLGHTGSGKSSLLEALLFRAEAITLKGRVDKGTNHADFTAQEKSHRHSLEPSFLNLDYANHHINIID TPGLPDFFGRALLPLPGVESVVLVIHAGVGIEAITKRAFEAARRQGKAVLIVINHIDGNESALAPLLQTIQAQFGQRCLP VNLPNVTGDGVVDCYLHCDPQAQTAFIGAECARDELVDTVLEEDELLMELYLEQGESLTPEQLHAPLETALRLGNLVPVC FTSAEKEIGISSLLEILIKLMPNPLEANPPQFVKGFGDNAKAVTVNQNPNEHVLAHVFRVAVDPFFGRMGVFRLYQGTIN VGMKLYIGQGRKPFKVAHLIKLQGEKHIDVAQAIPGNIYAIAKVEELEIGVVLHDSHDEDDFHMPENALPQPIFGLAVSP KRRGDEQKLSEVLNKLVAEDPSLRVTRGEALGQTLLQGQGDLHLQIALEKAQTVFNVDMETNIPAVPYRETILAEAKSRY RHKKQSGGSGQFGEVELMVEPLARGQGFEFVSKVVGGSVPSQYIPAIEKGVREAMLAGGVGGFPMQDIKVTVLDGKHHSV DSKEIAFVMAGKRAFMEAVTSAQPVILEPVVDMQICVEQGYVGEITGDISASRGMVCGTQAQTNGMVEVSVEAPLANVAD YSTRLKSMTGGEGQFSMSFSRYDVVPDRVQATLMR
Sequences:
>Translated_675_residues MAEFTTEQIRNLAVLGHTGSGKSSLLEALLFRAEAITLKGRVDKGTNHADFTAQEKSHRHSLEPSFLNLDYANHHINIID TPGLPDFFGRALLPLPGVESVVLVIHAGVGIEAITKRAFEAARRQGKAVLIVINHIDGNESALAPLLQTIQAQFGQRCLP VNLPNVTGDGVVDCYLHCDPQAQTAFIGAECARDELVDTVLEEDELLMELYLEQGESLTPEQLHAPLETALRLGNLVPVC FTSAEKEIGISSLLEILIKLMPNPLEANPPQFVKGFGDNAKAVTVNQNPNEHVLAHVFRVAVDPFFGRMGVFRLYQGTIN VGMKLYIGQGRKPFKVAHLIKLQGEKHIDVAQAIPGNIYAIAKVEELEIGVVLHDSHDEDDFHMPENALPQPIFGLAVSP KRRGDEQKLSEVLNKLVAEDPSLRVTRGEALGQTLLQGQGDLHLQIALEKAQTVFNVDMETNIPAVPYRETILAEAKSRY RHKKQSGGSGQFGEVELMVEPLARGQGFEFVSKVVGGSVPSQYIPAIEKGVREAMLAGGVGGFPMQDIKVTVLDGKHHSV DSKEIAFVMAGKRAFMEAVTSAQPVILEPVVDMQICVEQGYVGEITGDISASRGMVCGTQAQTNGMVEVSVEAPLANVAD YSTRLKSMTGGEGQFSMSFSRYDVVPDRVQATLMR >Mature_674_residues AEFTTEQIRNLAVLGHTGSGKSSLLEALLFRAEAITLKGRVDKGTNHADFTAQEKSHRHSLEPSFLNLDYANHHINIIDT PGLPDFFGRALLPLPGVESVVLVIHAGVGIEAITKRAFEAARRQGKAVLIVINHIDGNESALAPLLQTIQAQFGQRCLPV NLPNVTGDGVVDCYLHCDPQAQTAFIGAECARDELVDTVLEEDELLMELYLEQGESLTPEQLHAPLETALRLGNLVPVCF TSAEKEIGISSLLEILIKLMPNPLEANPPQFVKGFGDNAKAVTVNQNPNEHVLAHVFRVAVDPFFGRMGVFRLYQGTINV GMKLYIGQGRKPFKVAHLIKLQGEKHIDVAQAIPGNIYAIAKVEELEIGVVLHDSHDEDDFHMPENALPQPIFGLAVSPK RRGDEQKLSEVLNKLVAEDPSLRVTRGEALGQTLLQGQGDLHLQIALEKAQTVFNVDMETNIPAVPYRETILAEAKSRYR HKKQSGGSGQFGEVELMVEPLARGQGFEFVSKVVGGSVPSQYIPAIEKGVREAMLAGGVGGFPMQDIKVTVLDGKHHSVD SKEIAFVMAGKRAFMEAVTSAQPVILEPVVDMQICVEQGYVGEITGDISASRGMVCGTQAQTNGMVEVSVEAPLANVADY STRLKSMTGGEGQFSMSFSRYDVVPDRVQATLMR
Specific function: This Protein Promotes The GTP-Dependent Translocation Of The Nascent Protein Chain From The A-Site To The P-Site Of The Ribosome. [C]
COG id: COG0480
COG function: function code J; Translation elongation factors (GTPases)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-G/EF-2 subfamily [H]
Homologues:
Organism=Homo sapiens, GI18390331, Length=704, Percent_Identity=28.2670454545455, Blast_Score=263, Evalue=6e-70, Organism=Homo sapiens, GI19923640, Length=722, Percent_Identity=24.2382271468144, Blast_Score=193, Evalue=6e-49, Organism=Homo sapiens, GI25306287, Length=292, Percent_Identity=27.3972602739726, Blast_Score=118, Evalue=2e-26, Organism=Homo sapiens, GI25306283, Length=378, Percent_Identity=24.3386243386243, Blast_Score=96, Evalue=1e-19, Organism=Escherichia coli, GI1789738, Length=694, Percent_Identity=28.8184438040346, Blast_Score=314, Evalue=9e-87, Organism=Escherichia coli, GI1790835, Length=519, Percent_Identity=22.5433526011561, Blast_Score=95, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17533571, Length=703, Percent_Identity=26.6002844950213, Blast_Score=271, Evalue=8e-73, Organism=Caenorhabditis elegans, GI17556745, Length=157, Percent_Identity=28.0254777070064, Blast_Score=80, Evalue=3e-15, Organism=Saccharomyces cerevisiae, GI6323098, Length=697, Percent_Identity=27.8335724533716, Blast_Score=244, Evalue=3e-65, Organism=Saccharomyces cerevisiae, GI6322359, Length=784, Percent_Identity=22.9591836734694, Blast_Score=194, Evalue=3e-50, Organism=Saccharomyces cerevisiae, GI6324707, Length=476, Percent_Identity=23.3193277310924, Blast_Score=74, Evalue=9e-14, Organism=Saccharomyces cerevisiae, GI6320593, Length=476, Percent_Identity=23.3193277310924, Blast_Score=74, Evalue=9e-14, Organism=Drosophila melanogaster, GI24582462, Length=695, Percent_Identity=28.0575539568345, Blast_Score=287, Evalue=2e-77, Organism=Drosophila melanogaster, GI221458488, Length=712, Percent_Identity=22.3314606741573, Blast_Score=154, Evalue=2e-37,
Paralogues:
None
Copy number: 1080 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2520 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 7984 Molecules/Cell In: Growth Phase, Gl
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009022 - InterPro: IPR000795 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR005225 - InterPro: IPR004540 - InterPro: IPR000640 - InterPro: IPR005517 - InterPro: IPR004161 - InterPro: IPR009000 [H]
Pfam domain/function: PF00679 EFG_C; PF03764 EFG_IV; PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 73390; Mature: 73259
Theoretical pI: Translated: 5.31; Mature: 5.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEFTTEQIRNLAVLGHTGSGKSSLLEALLFRAEAITLKGRVDKGTNHADFTAQEKSHRH CCCCCHHHHHCEEEEECCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHC SLEPSFLNLDYANHHINIIDTPGLPDFFGRALLPLPGVESVVLVIHAGVGIEAITKRAFE CCCCCEEEEEECCCEEEEEECCCCCHHHCCHHCCCCCCCEEEEEEECCCCHHHHHHHHHH AARRQGKAVLIVINHIDGNESALAPLLQTIQAQFGQRCLPVNLPNVTGDGVVDCYLHCDP HHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCC QAQTAFIGAECARDELVDTVLEEDELLMELYLEQGESLTPEQLHAPLETALRLGNLVPVC CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHCCCCEEE FTSAEKEIGISSLLEILIKLMPNPLEANPPQFVKGFGDNAKAVTVNQNPNEHVLAHVFRV ECCCCHHCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH AVDPFFGRMGVFRLYQGTINVGMKLYIGQGRKPFKVAHLIKLQGEKHIDVAQAIPGNIYA HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHEEEECCCCCCCHHHCCCCCEEE IAKVEELEIGVVLHDSHDEDDFHMPENALPQPIFGLAVSPKRRGDEQKLSEVLNKLVAED EEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC PSLRVTRGEALGQTLLQGQGDLHLQIALEKAQTVFNVDMETNIPAVPYRETILAEAKSRY CCEEEECCHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH RHKKQSGGSGQFGEVELMVEPLARGQGFEFVSKVVGGSVPSQYIPAIEKGVREAMLAGGV HHHHCCCCCCCCCEEEEEEEHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC GGFPMQDIKVTVLDGKHHSVDSKEIAFVMAGKRAFMEAVTSAQPVILEPVVDMQICVEQG CCCCCCCEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEEECCHHHHHHHHHCC YVGEITGDISASRGMVCGTQAQTNGMVEVSVEAPLANVADYSTRLKSMTGGEGQFSMSFS CCEEEECCCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEH RYDVVPDRVQATLMR HCCCCHHHHHHHHCC >Mature Secondary Structure AEFTTEQIRNLAVLGHTGSGKSSLLEALLFRAEAITLKGRVDKGTNHADFTAQEKSHRH CCCCHHHHHCEEEEECCCCCHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCHHHHHHC SLEPSFLNLDYANHHINIIDTPGLPDFFGRALLPLPGVESVVLVIHAGVGIEAITKRAFE CCCCCEEEEEECCCEEEEEECCCCCHHHCCHHCCCCCCCEEEEEEECCCCHHHHHHHHHH AARRQGKAVLIVINHIDGNESALAPLLQTIQAQFGQRCLPVNLPNVTGDGVVDCYLHCDP HHHHCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEEEECCC QAQTAFIGAECARDELVDTVLEEDELLMELYLEQGESLTPEQLHAPLETALRLGNLVPVC CCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHCCCCEEE FTSAEKEIGISSLLEILIKLMPNPLEANPPQFVKGFGDNAKAVTVNQNPNEHVLAHVFRV ECCCCHHCCHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH AVDPFFGRMGVFRLYQGTINVGMKLYIGQGRKPFKVAHLIKLQGEKHIDVAQAIPGNIYA HHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHEEEECCCCCCCHHHCCCCCEEE IAKVEELEIGVVLHDSHDEDDFHMPENALPQPIFGLAVSPKRRGDEQKLSEVLNKLVAED EEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC PSLRVTRGEALGQTLLQGQGDLHLQIALEKAQTVFNVDMETNIPAVPYRETILAEAKSRY CCEEEECCHHHHHHHHCCCCCEEEEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHHH RHKKQSGGSGQFGEVELMVEPLARGQGFEFVSKVVGGSVPSQYIPAIEKGVREAMLAGGV HHHHCCCCCCCCCEEEEEEEHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC GGFPMQDIKVTVLDGKHHSVDSKEIAFVMAGKRAFMEAVTSAQPVILEPVVDMQICVEQG CCCCCCCEEEEEECCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEEECCHHHHHHHHHCC YVGEITGDISASRGMVCGTQAQTNGMVEVSVEAPLANVADYSTRLKSMTGGEGQFSMSFS CCEEEECCCCCCCCCEECCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEH RYDVVPDRVQATLMR HCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]