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The map label for this gene is tsf

Identifier: 167624894

GI number: 167624894

Start: 3624275

End: 3625126

Strand: Reverse

Name: tsf

Synonym: Shal_2980

Alternate gene names: 167624894

Gene position: 3625126-3624275 (Counterclockwise)

Preceding gene: 167624895

Following gene: 167624893

Centisome position: 69.35

GC content: 43.19

Gene sequence:

>852_bases
ATGGCAATTACTGCTGCCCAAGTTAAAGAACTTCGTGACCGCACTGGCGCTGGCATGATGGACTGTAAAAAAGCACTGAC
TGAAACTAACGGTGACATCGAGTTAGCAATTGATAACATGCGTAAGAGCGGTGCTGCTAAGGCTGCTAAAAAAGCGGGTA
ACATCGCTGCTGAAGGTGCAATCCTTATCAAGCAAGGCGAAGGTTACGCTGCTCTACTAGAAGTTAACTGTCAAACTGAC
TTCGTTGCAAAAGATTCTAACTTCCTAGCATTTGCTAATGAAGTACTAGATGTTGCTGCAGCATCTAAAGTAACTATCGA
AGATTTGAAAGCACAGTTCGAAGAAACTCGTGTTGCTCTAGTTACTAAAATCGGTGAAAACATCAACGTACGTCGTATTG
AGTACATCGATGGCGCTAACCTAGCACAGTACCGTCACGGCGAGCGTATTGGTGTTGTTGTTGCAGGTGAAGCTGATGAA
GAGACGCTAAAGCACATTGCAATGCACGTTGCTGCTTCTAAGCCTGAATACGTTAACCCTTCAGATGTTCCTGCGGAAGT
TGTAGAGAAAGAAAAAGCTCTTCAAATCGAAATCGCTATGAACGAAGGTAAGCCAGCTGAAATCGCTGAGAAGATGGTTA
TCGGTCGTATGAAGAAGTTCACTGGTGAGGTTTCTCTTACTGGTCAAGCTTTCATCATGGAACCAAAGAAAACTGTTGGC
GACATTCTTAAAGAGAAAGGCGCTTCAGTAACTAACTTCATTCGTTTAGAAGTTGGTGAAGGTATCGAAAGAAAAGAAGA
AGATTTTGCTGCTGAAGTAGCTGCACAAATCGCTGCTACTAATAAGGCTTAA

Upstream 100 bases:

>100_bases
CCAAGATACATGATTGGTGAACAGGGGCTCTTTCATTCAATATGATTGGCCCCTGTTTCTTATCTATTGAATTTGAAATT
TATCTGTAGAGGATTTAGCA

Downstream 100 bases:

>100_bases
TCTCCTTATTTAGCAAACATAAGACCGTAGCAATTGCTGCGGTCTTATCGTATATACTCAACTGGTTTTTTGTTTGGCTA
GATTCAGCCCAACCAAATTG

Product: elongation factor Ts

Products: NA

Alternate protein names: EF-Ts

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAITAAQVKELRDRTGAGMMDCKKALTETNGDIELAIDNMRKSGAAKAAKKAGNIAAEGAILIKQGEGYAALLEVNCQTD
FVAKDSNFLAFANEVLDVAAASKVTIEDLKAQFEETRVALVTKIGENINVRRIEYIDGANLAQYRHGERIGVVVAGEADE
ETLKHIAMHVAASKPEYVNPSDVPAEVVEKEKALQIEIAMNEGKPAEIAEKMVIGRMKKFTGEVSLTGQAFIMEPKKTVG
DILKEKGASVTNFIRLEVGEGIERKEEDFAAEVAAQIAATNKA

Sequences:

>Translated_283_residues
MAITAAQVKELRDRTGAGMMDCKKALTETNGDIELAIDNMRKSGAAKAAKKAGNIAAEGAILIKQGEGYAALLEVNCQTD
FVAKDSNFLAFANEVLDVAAASKVTIEDLKAQFEETRVALVTKIGENINVRRIEYIDGANLAQYRHGERIGVVVAGEADE
ETLKHIAMHVAASKPEYVNPSDVPAEVVEKEKALQIEIAMNEGKPAEIAEKMVIGRMKKFTGEVSLTGQAFIMEPKKTVG
DILKEKGASVTNFIRLEVGEGIERKEEDFAAEVAAQIAATNKA
>Mature_282_residues
AITAAQVKELRDRTGAGMMDCKKALTETNGDIELAIDNMRKSGAAKAAKKAGNIAAEGAILIKQGEGYAALLEVNCQTDF
VAKDSNFLAFANEVLDVAAASKVTIEDLKAQFEETRVALVTKIGENINVRRIEYIDGANLAQYRHGERIGVVVAGEADEE
TLKHIAMHVAASKPEYVNPSDVPAEVVEKEKALQIEIAMNEGKPAEIAEKMVIGRMKKFTGEVSLTGQAFIMEPKKTVGD
ILKEKGASVTNFIRLEVGEGIERKEEDFAAEVAAQIAATNKA

Specific function: Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome

COG id: COG0264

COG function: function code J; Translation elongation factor Ts

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the EF-Ts family

Homologues:

Organism=Homo sapiens, GI171846268, Length=277, Percent_Identity=23.4657039711191, Blast_Score=72, Evalue=5e-13,
Organism=Escherichia coli, GI1786366, Length=275, Percent_Identity=72, Blast_Score=386, Evalue=1e-108,
Organism=Caenorhabditis elegans, GI17561440, Length=292, Percent_Identity=25.3424657534247, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: 2670 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1100 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 4173 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 14563 Molecules/Cell In: Growth Phase, Gluco

Swissprot (AC and ID): EFTS_SHEHH (B0TP82)

Other databases:

- EMBL:   CP000931
- RefSeq:   YP_001675188.1
- ProteinModelPortal:   B0TP82
- SMR:   B0TP82
- GeneID:   5906390
- GenomeReviews:   CP000931_GR
- KEGG:   shl:Shal_2980
- HOGENOM:   HBG713289
- OMA:   YLHGTRI
- ProtClustDB:   PRK09377
- BioCyc:   SHAL458817:SHAL_2980-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00050
- InterPro:   IPR001816
- InterPro:   IPR014039
- InterPro:   IPR018101
- InterPro:   IPR009060
- InterPro:   IPR000449
- Gene3D:   G3DSA:3.30.479.20
- PANTHER:   PTHR11741
- TIGRFAMs:   TIGR00116

Pfam domain/function: PF00889 EF_TS; PF00627 UBA; SSF54713 EF_TS; SSF46934 UBA_like

EC number: NA

Molecular weight: Translated: 30450; Mature: 30319

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS01126 EF_TS_1; PS01127 EF_TS_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITAAQVKELRDRTGAGMMDCKKALTETNGDIELAIDNMRKSGAAKAAKKAGNIAAEGA
CCCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHHCCCEEECCE
ILIKQGEGYAALLEVNCQTDFVAKDSNFLAFANEVLDVAAASKVTIEDLKAQFEETRVAL
EEEEECCCEEEEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VTKIGENINVRRIEYIDGANLAQYRHGERIGVVVAGEADEETLKHIAMHVAASKPEYVNP
HHHHCCCCCEEEEEEECCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC
SDVPAEVVEKEKALQIEIAMNEGKPAEIAEKMVIGRMKKFTGEVSLTGQAFIMEPKKTVG
CCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHH
DILKEKGASVTNFIRLEVGEGIERKEEDFAAEVAAQIAATNKA
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
AITAAQVKELRDRTGAGMMDCKKALTETNGDIELAIDNMRKSGAAKAAKKAGNIAAEGA
CCCHHHHHHHHHHCCCCHHHHHHHHHCCCCCEEEEEECHHHCCHHHHHHHCCCEEECCE
ILIKQGEGYAALLEVNCQTDFVAKDSNFLAFANEVLDVAAASKVTIEDLKAQFEETRVAL
EEEEECCCEEEEEEEECCCCEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
VTKIGENINVRRIEYIDGANLAQYRHGERIGVVVAGEADEETLKHIAMHVAASKPEYVNP
HHHHCCCCCEEEEEEECCCCHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCC
SDVPAEVVEKEKALQIEIAMNEGKPAEIAEKMVIGRMKKFTGEVSLTGQAFIMEPKKTVG
CCCCHHHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEECCHHHHH
DILKEKGASVTNFIRLEVGEGIERKEEDFAAEVAAQIAATNKA
HHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA