BacMap

Definition	Shewanella halifaxensis HAW-EB4 chromosome, complete genome.
Accession	NC_010334
Length	5,226,917

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The map label for this gene is ucpA [C]

Identifier: 167624811

GI number: 167624811

Start: 3520707

End: 3521639

Strand: Reverse

Name: ucpA [C]

Synonym: Shal_2897

Alternate gene names: 167624811

Gene position: 3521639-3520707 (Counterclockwise)

Preceding gene: 167624813

Following gene: 167624810

Centisome position: 67.38

GC content: 49.41

Gene sequence:

>933_bases
ATGCGTTTTGAGGGACAAGTCGCAATAGTTACGGGCGCAGCATCGGGTCTTGGTAGAGCCTATGCGATTGCCTTAGCTGA
GCGAGGAGCACGAGTCGTTTTGGTTGATAATGAAACGACTCAAACAAAGGATGTTAGCTCCAGCATGACAAACCTAGAGC
CTGATTCAGGCCTGCAAGCTTGCGGTGCAGCGATAACGGCGTTAGGAGGTGAGTTCAAGTCTTTTACATTGGATGTCACC
AGCATCGATGATATTAACTCAATGGTTGATGATGTGGTAAAAAGTTGGGGTCGTGTCGATATCTTAATTAATAATGCGGG
TATTCATAAGTCCTGTGCATTTGAGCAGATGAGTGCCTCGAGTTGGAAGCATAATCTGGATGTGGATCTCAATGGAACCT
TCTACATGACTCAAGCCGTGTGGCCTTTTATGAAGCGTCAAAGTTATGGCCGAGTTGTGATGAGTAGTGCAAGCTCCATC
TACGGTGATATGTATGAAACCAGCTTTAGCACGAGCAAAATGGCGGTGATGGGACTGGTCAACAGTTTGCACCTTGAGGG
CGCAGAACACGGGATCAAGGTTAACAGTATTATTCCCCATGCAGTCACATCGATGACGGCAGAGCATTTAGCCCCAACAG
TTCGTCCACTTTTTTCAAAAACAACCGTTACGGCCACCATGTTGTACCTGTGTAGTTCTAAAAGCCCATCGGGTGAACAC
CTGCTCGCGGCGGCTGGCGGAATTAGCCATGCCGCTCTTGTTGAGTTTTCTCCGGGACGCTTTAAAGCCGAGGAGTGTAC
CCCTGAAGTGATCACCGAGCGTTGGCCTGAGCTCTACCATGCAAAACCCGTTACCGCTCATCGAAGTGGCGAGGCGCAGG
TGCTGGCTTGGGCAAAGGCATCGGCAAATCAGCGCCGTATCGTATTAGAGTAG

Upstream 100 bases:

>100_bases
CAAGATGAGAAGTTGTAATTGTCGCTTTAGAAATGAAACTGCTTTCTTAGCAGTCAACGTCTACATTTGTGATAGACAAA
TCTGTTTAGGGGTCGAAACT

Downstream 100 bases:

>100_bases
TGCTAGATTGAGTAGAACTGGCGAGACTAGGGGATCTTGAGTTAAGCTTATGGCCATAATTAGCTGATTTTTAGGTTGCA
ATGAGCCAAGTATTAGATGA

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MRFEGQVAIVTGAASGLGRAYAIALAERGARVVLVDNETTQTKDVSSSMTNLEPDSGLQACGAAITALGGEFKSFTLDVT
SIDDINSMVDDVVKSWGRVDILINNAGIHKSCAFEQMSASSWKHNLDVDLNGTFYMTQAVWPFMKRQSYGRVVMSSASSI
YGDMYETSFSTSKMAVMGLVNSLHLEGAEHGIKVNSIIPHAVTSMTAEHLAPTVRPLFSKTTVTATMLYLCSSKSPSGEH
LLAAAGGISHAALVEFSPGRFKAEECTPEVITERWPELYHAKPVTAHRSGEAQVLAWAKASANQRRIVLE

Sequences:

>Translated_310_residues
MRFEGQVAIVTGAASGLGRAYAIALAERGARVVLVDNETTQTKDVSSSMTNLEPDSGLQACGAAITALGGEFKSFTLDVT
SIDDINSMVDDVVKSWGRVDILINNAGIHKSCAFEQMSASSWKHNLDVDLNGTFYMTQAVWPFMKRQSYGRVVMSSASSI
YGDMYETSFSTSKMAVMGLVNSLHLEGAEHGIKVNSIIPHAVTSMTAEHLAPTVRPLFSKTTVTATMLYLCSSKSPSGEH
LLAAAGGISHAALVEFSPGRFKAEECTPEVITERWPELYHAKPVTAHRSGEAQVLAWAKASANQRRIVLE
>Mature_310_residues
MRFEGQVAIVTGAASGLGRAYAIALAERGARVVLVDNETTQTKDVSSSMTNLEPDSGLQACGAAITALGGEFKSFTLDVT
SIDDINSMVDDVVKSWGRVDILINNAGIHKSCAFEQMSASSWKHNLDVDLNGTFYMTQAVWPFMKRQSYGRVVMSSASSI
YGDMYETSFSTSKMAVMGLVNSLHLEGAEHGIKVNSIIPHAVTSMTAEHLAPTVRPLFSKTTVTATMLYLCSSKSPSGEH
LLAAAGGISHAALVEFSPGRFKAEECTPEVITERWPELYHAKPVTAHRSGEAQVLAWAKASANQRRIVLE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI4504505, Length=286, Percent_Identity=33.9160839160839, Blast_Score=151, Evalue=8e-37,
Organism=Homo sapiens, GI19923817, Length=206, Percent_Identity=27.6699029126214, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI59889578, Length=190, Percent_Identity=27.3684210526316, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI40254992, Length=253, Percent_Identity=27.6679841897233, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI31542939, Length=218, Percent_Identity=29.8165137614679, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI15277342, Length=209, Percent_Identity=27.7511961722488, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI223718074, Length=192, Percent_Identity=28.125, Blast_Score=76, Evalue=5e-14,
Organism=Homo sapiens, GI157739938, Length=215, Percent_Identity=24.6511627906977, Blast_Score=74, Evalue=1e-13,
Organism=Homo sapiens, GI7657478, Length=200, Percent_Identity=27, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI142976729, Length=220, Percent_Identity=25.4545454545455, Blast_Score=73, Evalue=3e-13,
Organism=Homo sapiens, GI40807363, Length=235, Percent_Identity=25.1063829787234, Blast_Score=73, Evalue=4e-13,
Organism=Homo sapiens, GI32483357, Length=204, Percent_Identity=29.4117647058824, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI66933014, Length=206, Percent_Identity=30.5825242718447, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI4503817, Length=200, Percent_Identity=28.5, Blast_Score=72, Evalue=8e-13,
Organism=Homo sapiens, GI25282469, Length=213, Percent_Identity=27.2300469483568, Blast_Score=72, Evalue=9e-13,
Organism=Homo sapiens, GI10190746, Length=261, Percent_Identity=29.1187739463602, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI224922801, Length=188, Percent_Identity=30.8510638297872, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI10190704, Length=241, Percent_Identity=23.6514522821577, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI126723191, Length=200, Percent_Identity=29.5, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI209862901, Length=218, Percent_Identity=25.6880733944954, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI19923983, Length=218, Percent_Identity=25.6880733944954, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI33667109, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=5e-11,
Organism=Homo sapiens, GI5031737, Length=196, Percent_Identity=27.5510204081633, Blast_Score=65, Evalue=8e-11,
Organism=Homo sapiens, GI7706318, Length=207, Percent_Identity=26.5700483091787, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI87082100, Length=227, Percent_Identity=30.8370044052863, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787335, Length=208, Percent_Identity=32.6923076923077, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789208, Length=210, Percent_Identity=30.4761904761905, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1787905, Length=264, Percent_Identity=27.2727272727273, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790717, Length=204, Percent_Identity=28.921568627451, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788459, Length=255, Percent_Identity=23.921568627451, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI87082160, Length=198, Percent_Identity=27.7777777777778, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789057, Length=195, Percent_Identity=29.2307692307692, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787526, Length=229, Percent_Identity=25.3275109170306, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786812, Length=200, Percent_Identity=27, Blast_Score=69, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17568967, Length=252, Percent_Identity=33.3333333333333, Blast_Score=139, Evalue=2e-33,
Organism=Caenorhabditis elegans, GI25147288, Length=213, Percent_Identity=30.9859154929577, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17567345, Length=216, Percent_Identity=30.5555555555556, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17561402, Length=211, Percent_Identity=27.9620853080569, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI193203117, Length=234, Percent_Identity=27.3504273504274, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI193203115, Length=231, Percent_Identity=27.7056277056277, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17555706, Length=215, Percent_Identity=26.046511627907, Blast_Score=78, Evalue=7e-15,
Organism=Caenorhabditis elegans, GI17538182, Length=211, Percent_Identity=30.3317535545024, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=202, Percent_Identity=29.2079207920792, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=25.8536585365854, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71982365, Length=201, Percent_Identity=25.8706467661692, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=205, Percent_Identity=24.8780487804878, Blast_Score=68, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=201, Percent_Identity=27.8606965174129, Blast_Score=68, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=196, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562904, Length=208, Percent_Identity=26.4423076923077, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17559104, Length=211, Percent_Identity=26.0663507109005, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560676, Length=196, Percent_Identity=27.5510204081633, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=210, Percent_Identity=23.8095238095238, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=210, Percent_Identity=24.7619047619048, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17555612, Length=218, Percent_Identity=25.2293577981651, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=294, Percent_Identity=31.2925170068027, Blast_Score=150, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6324126, Length=200, Percent_Identity=25, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI18859837, Length=252, Percent_Identity=36.9047619047619, Blast_Score=163, Evalue=2e-40,
Organism=Drosophila melanogaster, GI281364892, Length=216, Percent_Identity=26.8518518518519, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI23397609, Length=204, Percent_Identity=29.4117647058824, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644339, Length=215, Percent_Identity=25.5813953488372, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21355319, Length=212, Percent_Identity=24.5283018867925, Blast_Score=75, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24649181, Length=225, Percent_Identity=25.3333333333333, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24639444, Length=209, Percent_Identity=29.1866028708134, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21357041, Length=202, Percent_Identity=24.7524752475248, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21358495, Length=206, Percent_Identity=27.1844660194175, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=24.6231155778894, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI28571526, Length=202, Percent_Identity=24.2574257425743, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24640492, Length=206, Percent_Identity=23.3009708737864, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI17737361, Length=228, Percent_Identity=25.8771929824561, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI24581726, Length=223, Percent_Identity=24.6636771300448, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24580925, Length=186, Percent_Identity=25.2688172043011, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI45554248, Length=243, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=4e-11,
Organism=Drosophila melanogaster, GI24640117, Length=243, Percent_Identity=25.9259259259259, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 33379; Mature: 33379

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00626 RCC1_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFEGQVAIVTGAASGLGRAYAIALAERGARVVLVDNETTQTKDVSSSMTNLEPDSGLQA
CCCCCCEEEEEECCCCCCHHEEEEEHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHH
CGAAITALGGEFKSFTLDVTSIDDINSMVDDVVKSWGRVDILINNAGIHKSCAFEQMSAS
HHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHC
SWKHNLDVDLNGTFYMTQAVWPFMKRQSYGRVVMSSASSIYGDMYETSFSTSKMAVMGLV
CCCCCCEEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
NSLHLEGAEHGIKVNSIIPHAVTSMTAEHLAPTVRPLFSKTTVTATMLYLCSSKSPSGEH
HHHCCCCHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LLAAAGGISHAALVEFSPGRFKAEECTPEVITERWPELYHAKPVTAHRSGEAQVLAWAKA
EEEECCCCCEEEEEEECCCCEEHHHCCHHHHHHHCHHHHCCCCCCCCCCCCCEEEEEEEC
SANQRRIVLE
CCCCCEEEEC
>Mature Secondary Structure
MRFEGQVAIVTGAASGLGRAYAIALAERGARVVLVDNETTQTKDVSSSMTNLEPDSGLQA
CCCCCCEEEEEECCCCCCHHEEEEEHHCCCEEEEECCCCCCCHHHHHHHHCCCCCCCHHH
CGAAITALGGEFKSFTLDVTSIDDINSMVDDVVKSWGRVDILINNAGIHKSCAFEQMSAS
HHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHC
SWKHNLDVDLNGTFYMTQAVWPFMKRQSYGRVVMSSASSIYGDMYETSFSTSKMAVMGLV
CCCCCCEEECCCCEEEHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
NSLHLEGAEHGIKVNSIIPHAVTSMTAEHLAPTVRPLFSKTTVTATMLYLCSSKSPSGEH
HHHCCCCHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE
LLAAAGGISHAALVEFSPGRFKAEECTPEVITERWPELYHAKPVTAHRSGEAQVLAWAKA
EEEECCCCCEEEEEEECCCCEEHHHCCHHHHHHHCHHHHCCCCCCCCCCCCCEEEEEEEC
SANQRRIVLE
CCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230 [H]