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The map label for this gene is ompW [H]

Identifier: 167624801

GI number: 167624801

Start: 3509064

End: 3509708

Strand: Reverse

Name: ompW [H]

Synonym: Shal_2887

Alternate gene names: 167624801

Gene position: 3509708-3509064 (Counterclockwise)

Preceding gene: 167624804

Following gene: 167624799

Centisome position: 67.15

GC content: 42.95

Gene sequence:

>645_bases
ATGAACAAAAAAATCGTTTCTAGCTTAATTGCCACCGCCCTACTAACCACTGGTTTTAGCTCTTCTGTATTCGCTCACCA
AGCAGGCGATATTATCGTCCGCGCGGGTGTTGCTGTTGTTGCGCCAAATGAATCTAGTCAAGATGTCGCTGGTTTTGGTG
AATTTAGTGTTGATGACAACACCCAGCTTGGTTTGAACTTCGGCTATATGTTGACCGATAATATTGGTATTGAGCTTTTA
GCCGCTACGCCATTTACGCACGATATTTCACTCGATGGTGTAGGTAAAATCGCCGAGACTAAGCAGCTACCGCCAACTCT
TGTAGCACAGTACTATTTCGGTGATGCGCAATCTAAACTTCGTCCATACATTGGTGCGGGTGTTAACTTCACTAACTTCT
TCGATAACGAGTTTACCAATGACTTAGATGGTGCTTTGACTGATTTGAGTATGAGTAATTCTTGGGGCTTAGCGGCTCAG
GTTGGTTTAGATTATCAAATCAATGGCAGCTGGTTAATCAACGCATCAGTTTGGTATGCACAGATCAGTACCGACGTGAA
ATTTAACCTAGGTGCGGATGCTCAGAAAGTTGAAACAGATATTGACCCATGGGTTTACATGATTAGTGTAGGTTACACTT
TCTAA

Upstream 100 bases:

>100_bases
AGGTCAAATTTTGAGCGCTGATATTCTGGCAGGATGCGCGCAACTGTATGGATATTGATAACAAAAGCAGCGTTAAGTGT
TGTATTAATGGAGTAGTATA

Downstream 100 bases:

>100_bases
TCCAAAGATATTTGGACAAATCCTACCCATAAAAAAGGAGCCAATAGGCTCCTTTTTTATGTTTCATACGCAATTGCTGT
GGTTACTTCGACTCTTTCTT

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MNKKIVSSLIATALLTTGFSSSVFAHQAGDIIVRAGVAVVAPNESSQDVAGFGEFSVDDNTQLGLNFGYMLTDNIGIELL
AATPFTHDISLDGVGKIAETKQLPPTLVAQYYFGDAQSKLRPYIGAGVNFTNFFDNEFTNDLDGALTDLSMSNSWGLAAQ
VGLDYQINGSWLINASVWYAQISTDVKFNLGADAQKVETDIDPWVYMISVGYTF

Sequences:

>Translated_214_residues
MNKKIVSSLIATALLTTGFSSSVFAHQAGDIIVRAGVAVVAPNESSQDVAGFGEFSVDDNTQLGLNFGYMLTDNIGIELL
AATPFTHDISLDGVGKIAETKQLPPTLVAQYYFGDAQSKLRPYIGAGVNFTNFFDNEFTNDLDGALTDLSMSNSWGLAAQ
VGLDYQINGSWLINASVWYAQISTDVKFNLGADAQKVETDIDPWVYMISVGYTF
>Mature_214_residues
MNKKIVSSLIATALLTTGFSSSVFAHQAGDIIVRAGVAVVAPNESSQDVAGFGEFSVDDNTQLGLNFGYMLTDNIGIELL
AATPFTHDISLDGVGKIAETKQLPPTLVAQYYFGDAQSKLRPYIGAGVNFTNFFDNEFTNDLDGALTDLSMSNSWGLAAQ
VGLDYQINGSWLINASVWYAQISTDVKFNLGADAQKVETDIDPWVYMISVGYTF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=216, Percent_Identity=53.7037037037037, Blast_Score=231, Evalue=2e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 23062; Mature: 23062

Theoretical pI: Translated: 3.94; Mature: 3.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKKIVSSLIATALLTTGFSSSVFAHQAGDIIVRAGVAVVAPNESSQDVAGFGEFSVDDN
CCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCC
TQLGLNFGYMLTDNIGIELLAATPFTHDISLDGVGKIAETKQLPPTLVAQYYFGDAQSKL
CEEEEEEEEEEECCCCEEEEEECCCCEECCCCCCCCHHHHCCCCHHHEEHHHCCCCHHHC
RPYIGAGVNFTNFFDNEFTNDLDGALTDLSMSNSWGLAAQVGLDYQINGSWLINASVWYA
CHHHCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCEEEEECCCEEECCCEEEEEEEEEE
QISTDVKFNLGADAQKVETDIDPWVYMISVGYTF
EEECCEEEECCCCHHHHHCCCCCEEEEEEEECCC
>Mature Secondary Structure
MNKKIVSSLIATALLTTGFSSSVFAHQAGDIIVRAGVAVVAPNESSQDVAGFGEFSVDDN
CCHHHHHHHHHHHHHHCCCCCCEEEECCCCEEEECCEEEECCCCCCCCCCCCCCCCCCCC
TQLGLNFGYMLTDNIGIELLAATPFTHDISLDGVGKIAETKQLPPTLVAQYYFGDAQSKL
CEEEEEEEEEEECCCCEEEEEECCCCEECCCCCCCCHHHHCCCCHHHEEHHHCCCCHHHC
RPYIGAGVNFTNFFDNEFTNDLDGALTDLSMSNSWGLAAQVGLDYQINGSWLINASVWYA
CHHHCCCCCCCCCCCCCCCCCCCCHHEECCCCCCCCEEEEECCCEEECCCEEEEEEEEEE
QISTDVKFNLGADAQKVETDIDPWVYMISVGYTF
EEECCEEEECCCCHHHHHCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2336399; 10952301 [H]