| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is fabG [H]
Identifier: 167624786
GI number: 167624786
Start: 3492284
End: 3493042
Strand: Reverse
Name: fabG [H]
Synonym: Shal_2872
Alternate gene names: 167624786
Gene position: 3493042-3492284 (Counterclockwise)
Preceding gene: 167624787
Following gene: 167624785
Centisome position: 66.83
GC content: 46.11
Gene sequence:
>759_bases ATGGATTTAAAAGATAAGGTTGTTGTTATTACTGGTGGTGCAGGTGGACTAGGTTACGCCATGGCGGAGAATTTAGCGGC TGCAGGTGCCAAGCTAGCACTTATCGACGTTGACCAAGAAAAGTTGGAAAAAGCCTGTGCCAACATAGGTGCAACCACTG AAGTTCAAGGTTATGCCGTAGACATCACCGATGAAGAAGATGTATTTGCCACTTTTCAATTCATTAAAGAAGACTTTGGC CGAGTTAACGTATTGATCAATAATGCAGGTATTTTGCGTGATGGTCTTTTGCTTAAAGCTAAAGAAGGTCAAGTATTTGA GCGTATGTCATTTGAACAATTCCAGTCGGTGATTAACGTTAACCTAACGGGTTCATTCTTGTGCGGCCGTGAAGCGGCTG CGGCAATGATTGAAACTGAGCAAGAAGGGGTGATTATCAACATCTCTAGCCTTGCGAAAGCGGGTAACGTGGGTCAGACA AATTACGCAGCATCGAAAGCGGGCGTAGCGGCGATGAGTGTGGGTTGGGCTAAAGAGCTTGCTCGCTACAATATCCGCAG CGCAGCAGTGGCGCCAGGTGTGATTGAAACTGAAATGACCGCGGCCATGAAGCCTGAAGCGCTAGAGCGTTTAGAGAAAA TGGTACCAGTAGGGCGTTTAGGTCAAGCTGAAGAGATCGCATCGACAGTACGTTTTATCATAGAAAATGATTATGTGAAC GGCCGCGTATTTGAAATCGATGGTGGCATTCGCTTGTAA
Upstream 100 bases:
>100_bases TATGTGAATCATGCGAAACAAGGTAACGGTAAGCGAGATTTTTCGAGTATTTTTGAGCTGTTTGCTCAGTCAGAACAGAT AAAAAACAAAGGGTGACCCA
Downstream 100 bases:
>100_bases GTTTAGGTGTTGGTGCAAGAGATCGCATCGACAGTACGCTCTATCATAGAAAATGATCATGTAAACGGCTGGGTGAACGG CCGTGTATTTGAAGTCGATG
Product: 3-ketoacyl-(acyl-carrier-protein) reductase
Products: NA
Alternate protein names: 3-ketoacyl-acyl carrier protein reductase [H]
Number of amino acids: Translated: 252; Mature: 252
Protein sequence:
>252_residues MDLKDKVVVITGGAGGLGYAMAENLAAAGAKLALIDVDQEKLEKACANIGATTEVQGYAVDITDEEDVFATFQFIKEDFG RVNVLINNAGILRDGLLLKAKEGQVFERMSFEQFQSVINVNLTGSFLCGREAAAAMIETEQEGVIINISSLAKAGNVGQT NYAASKAGVAAMSVGWAKELARYNIRSAAVAPGVIETEMTAAMKPEALERLEKMVPVGRLGQAEEIASTVRFIIENDYVN GRVFEIDGGIRL
Sequences:
>Translated_252_residues MDLKDKVVVITGGAGGLGYAMAENLAAAGAKLALIDVDQEKLEKACANIGATTEVQGYAVDITDEEDVFATFQFIKEDFG RVNVLINNAGILRDGLLLKAKEGQVFERMSFEQFQSVINVNLTGSFLCGREAAAAMIETEQEGVIINISSLAKAGNVGQT NYAASKAGVAAMSVGWAKELARYNIRSAAVAPGVIETEMTAAMKPEALERLEKMVPVGRLGQAEEIASTVRFIIENDYVN GRVFEIDGGIRL >Mature_252_residues MDLKDKVVVITGGAGGLGYAMAENLAAAGAKLALIDVDQEKLEKACANIGATTEVQGYAVDITDEEDVFATFQFIKEDFG RVNVLINNAGILRDGLLLKAKEGQVFERMSFEQFQSVINVNLTGSFLCGREAAAAMIETEQEGVIINISSLAKAGNVGQT NYAASKAGVAAMSVGWAKELARYNIRSAAVAPGVIETEMTAAMKPEALERLEKMVPVGRLGQAEEIASTVRFIIENDYVN GRVFEIDGGIRL
Specific function: Fatty acid biosynthesis pathway; first reduction step. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=249, Percent_Identity=38.9558232931727, Blast_Score=165, Evalue=4e-41, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=38.3720930232558, Blast_Score=147, Evalue=6e-36, Organism=Homo sapiens, GI15277342, Length=260, Percent_Identity=34.2307692307692, Blast_Score=145, Evalue=4e-35, Organism=Homo sapiens, GI83715985, Length=258, Percent_Identity=36.8217054263566, Blast_Score=132, Evalue=4e-31, Organism=Homo sapiens, GI109715829, Length=240, Percent_Identity=28.75, Blast_Score=99, Evalue=5e-21, Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=29.0076335877863, Blast_Score=96, Evalue=2e-20, Organism=Homo sapiens, GI10190704, Length=258, Percent_Identity=29.8449612403101, Blast_Score=86, Evalue=3e-17, Organism=Homo sapiens, GI31542939, Length=263, Percent_Identity=26.9961977186312, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI4504505, Length=252, Percent_Identity=30.5555555555556, Blast_Score=80, Evalue=1e-15, Organism=Homo sapiens, GI32483357, Length=253, Percent_Identity=25.6916996047431, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI59889578, Length=241, Percent_Identity=28.2157676348548, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI4503301, Length=237, Percent_Identity=26.1603375527426, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI20149619, Length=206, Percent_Identity=31.0679611650485, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI66933014, Length=260, Percent_Identity=30, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI142976729, Length=200, Percent_Identity=26, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI40807363, Length=229, Percent_Identity=27.5109170305677, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI210032110, Length=254, Percent_Identity=22.8346456692913, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI5031737, Length=252, Percent_Identity=26.984126984127, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI7705925, Length=255, Percent_Identity=25.0980392156863, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI226371731, Length=228, Percent_Identity=26.7543859649123, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI224922801, Length=180, Percent_Identity=29.4444444444444, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI209862901, Length=199, Percent_Identity=27.1356783919598, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI19923983, Length=199, Percent_Identity=27.1356783919598, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI19743808, Length=220, Percent_Identity=28.6363636363636, Blast_Score=65, Evalue=6e-11, Organism=Escherichia coli, GI1787335, Length=255, Percent_Identity=35.2941176470588, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1790717, Length=257, Percent_Identity=33.0739299610895, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI2367175, Length=254, Percent_Identity=33.8582677165354, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87082160, Length=259, Percent_Identity=33.2046332046332, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI1789208, Length=256, Percent_Identity=30.46875, Blast_Score=100, Evalue=6e-23, Organism=Escherichia coli, GI1788459, Length=256, Percent_Identity=29.296875, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=29.3893129770992, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1789057, Length=265, Percent_Identity=27.5471698113208, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1787905, Length=257, Percent_Identity=28.7937743190661, Blast_Score=85, Evalue=4e-18, Organism=Escherichia coli, GI1786812, Length=267, Percent_Identity=28.0898876404494, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787526, Length=223, Percent_Identity=24.2152466367713, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=27.5303643724696, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1789378, Length=261, Percent_Identity=27.5862068965517, Blast_Score=63, Evalue=2e-11, Organism=Caenorhabditis elegans, GI25147288, Length=254, Percent_Identity=38.5826771653543, Blast_Score=167, Evalue=4e-42, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=39.4422310756972, Blast_Score=166, Evalue=1e-41, Organism=Caenorhabditis elegans, GI17538182, Length=256, Percent_Identity=34.765625, Blast_Score=144, Evalue=6e-35, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=31.3953488372093, Blast_Score=103, Evalue=8e-23, Organism=Caenorhabditis elegans, GI17544670, Length=268, Percent_Identity=30.9701492537313, Blast_Score=101, Evalue=4e-22, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=30.6201550387597, Blast_Score=99, Evalue=3e-21, Organism=Caenorhabditis elegans, GI17560676, Length=256, Percent_Identity=24.609375, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17562910, Length=268, Percent_Identity=27.2388059701493, Blast_Score=91, Evalue=8e-19, Organism=Caenorhabditis elegans, GI17538486, Length=269, Percent_Identity=27.8810408921933, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI17561272, Length=241, Percent_Identity=29.4605809128631, Blast_Score=89, Evalue=3e-18, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=29.0697674418605, Blast_Score=88, Evalue=5e-18, Organism=Caenorhabditis elegans, GI193203115, Length=202, Percent_Identity=29.2079207920792, Blast_Score=87, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17561402, Length=255, Percent_Identity=27.0588235294118, Blast_Score=86, Evalue=1e-17, Organism=Caenorhabditis elegans, GI17559104, Length=266, Percent_Identity=26.3157894736842, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI193203117, Length=198, Percent_Identity=29.2929292929293, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17568967, Length=254, Percent_Identity=27.1653543307087, Blast_Score=83, Evalue=1e-16, Organism=Caenorhabditis elegans, GI71994604, Length=259, Percent_Identity=28.957528957529, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI115534694, Length=258, Percent_Identity=27.1317829457364, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17560150, Length=269, Percent_Identity=27.5092936802974, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17508895, Length=249, Percent_Identity=27.3092369477912, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193204405, Length=266, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17562904, Length=270, Percent_Identity=25.9259259259259, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17565030, Length=272, Percent_Identity=27.9411764705882, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17562906, Length=266, Percent_Identity=25.9398496240602, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=27.0676691729323, Blast_Score=78, Evalue=4e-15, Organism=Caenorhabditis elegans, GI17562990, Length=267, Percent_Identity=26.5917602996255, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17563726, Length=267, Percent_Identity=28.4644194756554, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=27.4436090225564, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17564282, Length=199, Percent_Identity=28.643216080402, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI72000259, Length=267, Percent_Identity=27.3408239700375, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17562908, Length=265, Percent_Identity=24.9056603773585, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17567345, Length=168, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71997099, Length=210, Percent_Identity=29.5238095238095, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17538480, Length=270, Percent_Identity=26.6666666666667, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17551412, Length=270, Percent_Identity=26.6666666666667, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=230, Percent_Identity=37.8260869565217, Blast_Score=109, Evalue=3e-25, Organism=Saccharomyces cerevisiae, GI6324126, Length=268, Percent_Identity=30.2238805970149, Blast_Score=86, Evalue=6e-18, Organism=Saccharomyces cerevisiae, GI6323882, Length=206, Percent_Identity=30.5825242718447, Blast_Score=70, Evalue=3e-13, Organism=Saccharomyces cerevisiae, GI6323458, Length=210, Percent_Identity=28.5714285714286, Blast_Score=64, Evalue=3e-11, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=38.1322957198444, Blast_Score=145, Evalue=2e-35, Organism=Drosophila melanogaster, GI24639444, Length=254, Percent_Identity=35.8267716535433, Blast_Score=141, Evalue=4e-34, Organism=Drosophila melanogaster, GI23397609, Length=258, Percent_Identity=31.7829457364341, Blast_Score=107, Evalue=9e-24, Organism=Drosophila melanogaster, GI28571526, Length=261, Percent_Identity=32.183908045977, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24644339, Length=260, Percent_Identity=31.9230769230769, Blast_Score=97, Evalue=1e-20, Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=31.5384615384615, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI21355319, Length=254, Percent_Identity=28.740157480315, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI24643142, Length=257, Percent_Identity=26.0700389105058, Blast_Score=84, Evalue=9e-17, Organism=Drosophila melanogaster, GI24641232, Length=243, Percent_Identity=27.1604938271605, Blast_Score=82, Evalue=4e-16, Organism=Drosophila melanogaster, GI24663911, Length=242, Percent_Identity=26.4462809917355, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI116007234, Length=211, Percent_Identity=31.2796208530806, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=24.1803278688525, Blast_Score=78, Evalue=6e-15, Organism=Drosophila melanogaster, GI18859837, Length=215, Percent_Identity=31.1627906976744, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24644337, Length=264, Percent_Identity=30.3030303030303, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI221331218, Length=258, Percent_Identity=26.7441860465116, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI24665243, Length=258, Percent_Identity=26.7441860465116, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI28571387, Length=211, Percent_Identity=27.0142180094787, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281364892, Length=215, Percent_Identity=29.7674418604651, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI221331216, Length=259, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24665247, Length=259, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24581726, Length=229, Percent_Identity=26.6375545851528, Blast_Score=71, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007232, Length=179, Percent_Identity=32.4022346368715, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI281364494, Length=209, Percent_Identity=25.8373205741627, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI24648944, Length=236, Percent_Identity=24.5762711864407, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24640492, Length=221, Percent_Identity=26.2443438914027, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24641388, Length=241, Percent_Identity=24.896265560166, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24649181, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI221510726, Length=202, Percent_Identity=31.6831683168317, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21356301, Length=191, Percent_Identity=28.2722513089005, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI116007238, Length=190, Percent_Identity=25.2631578947368, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI161076933, Length=199, Percent_Identity=27.6381909547739, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI24584748, Length=199, Percent_Identity=27.6381909547739, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011284 - InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.100 [H]
Molecular weight: Translated: 26886; Mature: 26886
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLKDKVVVITGGAGGLGYAMAENLAAAGAKLALIDVDQEKLEKACANIGATTEVQGYAV CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEE DITDEEDVFATFQFIKEDFGRVNVLINNAGILRDGLLLKAKEGQVFERMSFEQFQSVINV EECCCCHHHHHHHHHHHCCCEEEEEEECCCEEECCEEEEECCCCHHHHHCHHHHHHHEEE NLTGSFLCGREAAAAMIETEQEGVIINISSLAKAGNVGQTNYAASKAGVAAMSVGWAKEL CCCCCEEECHHHHHHHHEECCCCEEEEHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHH ARYNIRSAAVAPGVIETEMTAAMKPEALERLEKMVPVGRLGQAEEIASTVRFIIENDYVN HHHCHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC GRVFEIDGGIRL CEEEEECCCCCC >Mature Secondary Structure MDLKDKVVVITGGAGGLGYAMAENLAAAGAKLALIDVDQEKLEKACANIGATTEVQGYAV CCCCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCCCCCEEEE DITDEEDVFATFQFIKEDFGRVNVLINNAGILRDGLLLKAKEGQVFERMSFEQFQSVINV EECCCCHHHHHHHHHHHCCCEEEEEEECCCEEECCEEEEECCCCHHHHHCHHHHHHHEEE NLTGSFLCGREAAAAMIETEQEGVIINISSLAKAGNVGQTNYAASKAGVAAMSVGWAKEL CCCCCEEECHHHHHHHHEECCCCEEEEHHHHHCCCCCCCCCCHHHHCCHHHHHHHHHHHH ARYNIRSAAVAPGVIETEMTAAMKPEALERLEKMVPVGRLGQAEEIASTVRFIIENDYVN HHHCHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC GRVFEIDGGIRL CEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10360571 [H]