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The map label for this gene is arlR [H]

Identifier: 167624766

GI number: 167624766

Start: 3466519

End: 3467190

Strand: Reverse

Name: arlR [H]

Synonym: Shal_2850

Alternate gene names: 167624766

Gene position: 3467190-3466519 (Counterclockwise)

Preceding gene: 167624767

Following gene: 167624765

Centisome position: 66.33

GC content: 41.37

Gene sequence:

>672_bases
ATGTTGGTATTACTAGTTGAAGATAACTTGTTATTGGCAAAGAATATAATTCAATATCTAGAATTAATAGACATTGAGTG
TGACTATGCAGGGTCGTTAGCACAAGCAGAAGTTCAAGTGTATAGTCGTTCTTTTGACGCAATTATATTGGATTTAAACT
TACCTGATGGTGATGGTTTAGAAGCGTGTAAAAAGTGGAAAGAACAGCGTGTCGTCTCACCTGTGATTATGTTAACTGCA
CGAAGTGGATTACAAGATAAACTGTCAGGTTTTGAAGTCGGTGCAGACGACTATCTTATAAAACCATTTGCCATGCCTGA
GTTGGTGGCAAGATTAAGGGTCGTCGCAGAGAGAAGACCCGCGCCTAAAGTATTAAGGTTGGGAGAACTTGAGTTTGATT
TCGCGGGACATACAGTACACAGATTAGGTAAAGAGTTGCCTTTATCACGTACGGGGTGGCAAATTTTGGCTTTATTGGCT
CGTCGTAGCCCTGAAACGGTAGAGCGAGAAGAGATAGAGCGCACGCTATGGCCTGATAGCTTACCCGATAGTGACAGCCT
AAGAAGTCATGTACATTTACTCAGAAAAATAGTTGATAAGCCTTTTGAACATCAATACCTGCATACTGTACGCGGCGTAG
GGTTGTGCTTAAAGGTTGAAGCATGTCAATAA

Upstream 100 bases:

>100_bases
TGGAGTGGAGTATCACTTTGAGTCGATGAGAAGTAAATTATCGGCAACTAATCGGGCAAATTTAGTTCATATTGCACATC
AGTTGGAGATTATATAAAGC

Downstream 100 bases:

>100_bases
ACAATAATATGAGCTTAAAGCGTGTATACCAGTGTTATGGTGTCATATTCTTAGCTGTAACTTTGCTTATTAATATCTTT
ATCCCACTTTGTTTGATGTG

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MLVLLVEDNLLLAKNIIQYLELIDIECDYAGSLAQAEVQVYSRSFDAIILDLNLPDGDGLEACKKWKEQRVVSPVIMLTA
RSGLQDKLSGFEVGADDYLIKPFAMPELVARLRVVAERRPAPKVLRLGELEFDFAGHTVHRLGKELPLSRTGWQILALLA
RRSPETVEREEIERTLWPDSLPDSDSLRSHVHLLRKIVDKPFEHQYLHTVRGVGLCLKVEACQ

Sequences:

>Translated_223_residues
MLVLLVEDNLLLAKNIIQYLELIDIECDYAGSLAQAEVQVYSRSFDAIILDLNLPDGDGLEACKKWKEQRVVSPVIMLTA
RSGLQDKLSGFEVGADDYLIKPFAMPELVARLRVVAERRPAPKVLRLGELEFDFAGHTVHRLGKELPLSRTGWQILALLA
RRSPETVEREEIERTLWPDSLPDSDSLRSHVHLLRKIVDKPFEHQYLHTVRGVGLCLKVEACQ
>Mature_223_residues
MLVLLVEDNLLLAKNIIQYLELIDIECDYAGSLAQAEVQVYSRSFDAIILDLNLPDGDGLEACKKWKEQRVVSPVIMLTA
RSGLQDKLSGFEVGADDYLIKPFAMPELVARLRVVAERRPAPKVLRLGELEFDFAGHTVHRLGKELPLSRTGWQILALLA
RRSPETVEREEIERTLWPDSLPDSDSLRSHVHLLRKIVDKPFEHQYLHTVRGVGLCLKVEACQ

Specific function: Member of the two-component regulatory system ArlS/ArlR [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1790552, Length=220, Percent_Identity=34.5454545454545, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=34.5454545454545, Blast_Score=120, Evalue=7e-29,
Organism=Escherichia coli, GI1786911, Length=218, Percent_Identity=33.0275229357798, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1786784, Length=231, Percent_Identity=31.1688311688312, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI87082012, Length=223, Percent_Identity=33.1838565022422, Blast_Score=107, Evalue=6e-25,
Organism=Escherichia coli, GI1787375, Length=222, Percent_Identity=29.7297297297297, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1789809, Length=226, Percent_Identity=27.8761061946903, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI1786599, Length=219, Percent_Identity=30.5936073059361, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788394, Length=231, Percent_Identity=31.1688311688312, Blast_Score=87, Evalue=7e-19,
Organism=Escherichia coli, GI1790860, Length=227, Percent_Identity=31.7180616740088, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=28.3842794759825, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI2367329, Length=236, Percent_Identity=29.6610169491525, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1790863, Length=116, Percent_Identity=32.7586206896552, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 25261; Mature: 25261

Theoretical pI: Translated: 5.66; Mature: 5.66

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVLLVEDNLLLAKNIIQYLELIDIECDYAGSLAQAEVQVYSRSFDAIILDLNLPDGDGL
CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCH
EACKKWKEQRVVSPVIMLTARSGLQDKLSGFEVGADDYLIKPFAMPELVARLRVVAERRP
HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCC
APKVLRLGELEFDFAGHTVHRLGKELPLSRTGWQILALLARRSPETVEREEIERTLWPDS
CCHHHEECCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
LPDSDSLRSHVHLLRKIVDKPFEHQYLHTVRGVGLCLKVEACQ
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCC
>Mature Secondary Structure
MLVLLVEDNLLLAKNIIQYLELIDIECDYAGSLAQAEVQVYSRSFDAIILDLNLPDGDGL
CEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCH
EACKKWKEQRVVSPVIMLTARSGLQDKLSGFEVGADDYLIKPFAMPELVARLRVVAERRP
HHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCC
APKVLRLGELEFDFAGHTVHRLGKELPLSRTGWQILALLARRSPETVEREEIERTLWPDS
CCHHHEECCEEECCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
LPDSDSLRSHVHLLRKIVDKPFEHQYLHTVRGVGLCLKVEACQ
CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA