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The map label for this gene is ydaM [H]

Identifier: 167624748

GI number: 167624748

Start: 3443029

End: 3443628

Strand: Reverse

Name: ydaM [H]

Synonym: Shal_2831

Alternate gene names: 167624748

Gene position: 3443628-3443029 (Counterclockwise)

Preceding gene: 167624749

Following gene: 167624746

Centisome position: 65.88

GC content: 41.67

Gene sequence:

>600_bases
ATGATTATAAATGTTTTGCAAAAGCTTGGGCGGCTAAAAATAGTCATTCTTATTACTATCGCTTCGATTTTAGTGTCTGT
TTTTATTACACTCTTTACGTTTCACGTTGGTCTGGGTGAGGCTGCATCGCATATTGGCATTTTTTTGGCCATCGTTATCC
CATCGATCGTCGCGCCACTTGCCTCATGGCAGCTGATAGGCTTGCTGATGAAAATTGATCGTCTTGAAAAAGAGATGAGG
CGGCTGGCAACAATTGATCCTTTGACAGAACTCTTAAATCGGCGAGCATTTTTTCATGATGCTGAAATATATATTAATTG
TGCCAAACGAGAGCTGACAAACTTGTCGGTCATCGCGCTTGATTTAGATGCATTTAAGCATATTAATGACAGTTATGGGC
ACTCTACGGGTGACCAAGTGTTAACACATTTCTCTGCAACCCTTAAGGCGAATAGTCGAAAATCTGATCTCATTTGTCGC
TTAGGTGGTGAGGAGTTTGCGTTGTTACTGCCCAGTACATCTGAAAATGAAGCCTATGTACTTTCTGAGAGACTGCCCAG
GCTATTAGGGAGTCGGATATCAAACATGAACAGTCATTGA

Upstream 100 bases:

>100_bases
TTACCTCTTATTTAGTTGCCCTTGTTGGTTACTCTTTATTGGTTAGCCACTTAATTGGTTGTTGCCAGTTGTTATCGCAA
GCCTGGCGGAATTAATACAC

Downstream 100 bases:

>100_bases
TAAAATATACTGTCAGTGTTGGCTTAGTATCACTGCTACCATCAAAAACGGATAATATTGAAAGCCTGCTTAAAAAGGCT
GACCAGTCTCTGTATCTTGC

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MIINVLQKLGRLKIVILITIASILVSVFITLFTFHVGLGEAASHIGIFLAIVIPSIVAPLASWQLIGLLMKIDRLEKEMR
RLATIDPLTELLNRRAFFHDAEIYINCAKRELTNLSVIALDLDAFKHINDSYGHSTGDQVLTHFSATLKANSRKSDLICR
LGGEEFALLLPSTSENEAYVLSERLPRLLGSRISNMNSH

Sequences:

>Translated_199_residues
MIINVLQKLGRLKIVILITIASILVSVFITLFTFHVGLGEAASHIGIFLAIVIPSIVAPLASWQLIGLLMKIDRLEKEMR
RLATIDPLTELLNRRAFFHDAEIYINCAKRELTNLSVIALDLDAFKHINDSYGHSTGDQVLTHFSATLKANSRKSDLICR
LGGEEFALLLPSTSENEAYVLSERLPRLLGSRISNMNSH
>Mature_199_residues
MIINVLQKLGRLKIVILITIASILVSVFITLFTFHVGLGEAASHIGIFLAIVIPSIVAPLASWQLIGLLMKIDRLEKEMR
RLATIDPLTELLNRRAFFHDAEIYINCAKRELTNLSVIALDLDAFKHINDSYGHSTGDQVLTHFSATLKANSRKSDLICR
LGGEEFALLLPSTSENEAYVLSERLPRLLGSRISNMNSH

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=110, Percent_Identity=46.3636363636364, Blast_Score=94, Evalue=4e-21,
Organism=Escherichia coli, GI145693134, Length=122, Percent_Identity=41.8032786885246, Blast_Score=88, Evalue=4e-19,
Organism=Escherichia coli, GI87082007, Length=127, Percent_Identity=37.7952755905512, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787262, Length=106, Percent_Identity=37.7358490566038, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1787802, Length=114, Percent_Identity=33.3333333333333, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1788381, Length=112, Percent_Identity=35.7142857142857, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786584, Length=156, Percent_Identity=26.2820512820513, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI1788085, Length=107, Percent_Identity=32.7102803738318, Blast_Score=70, Evalue=8e-14,
Organism=Escherichia coli, GI87081974, Length=116, Percent_Identity=33.6206896551724, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=152, Percent_Identity=31.5789473684211, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1787541, Length=112, Percent_Identity=34.8214285714286, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 22148; Mature: 22148

Theoretical pI: Translated: 8.27; Mature: 8.27

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIINVLQKLGRLKIVILITIASILVSVFITLFTFHVGLGEAASHIGIFLAIVIPSIVAPL
CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
ASWQLIGLLMKIDRLEKEMRRLATIDPLTELLNRRAFFHDAEIYINCAKRELTNLSVIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEHHHHHCCCEEEEE
DLDAFKHINDSYGHSTGDQVLTHFSATLKANSRKSDLICRLGGEEFALLLPSTSENEAYV
EHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCEEH
LSERLPRLLGSRISNMNSH
HHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MIINVLQKLGRLKIVILITIASILVSVFITLFTFHVGLGEAASHIGIFLAIVIPSIVAPL
CHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
ASWQLIGLLMKIDRLEKEMRRLATIDPLTELLNRRAFFHDAEIYINCAKRELTNLSVIAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEEEHHHHHCCCEEEEE
DLDAFKHINDSYGHSTGDQVLTHFSATLKANSRKSDLICRLGGEEFALLLPSTSENEAYV
EHHHHHHCCHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCEEEEEECCCCCCCEEH
LSERLPRLLGSRISNMNSH
HHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]