| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is yqgI [H]
Identifier: 167624745
GI number: 167624745
Start: 3437985
End: 3439637
Strand: Reverse
Name: yqgI [H]
Synonym: Shal_2828
Alternate gene names: 167624745
Gene position: 3439637-3437985 (Counterclockwise)
Preceding gene: 167624746
Following gene: 167624744
Centisome position: 65.81
GC content: 46.64
Gene sequence:
>1653_bases ATGGGTAAGTGGTTTAAATCGGGCTCTCCTTGGATTTGGATGACCAGTGGCGCAGTGAGCGTGTGTTTGATTTCGGTTCT AGGTTTACTGCTACTCATTGCTTGGCGTGGTCTTAGCTACTTCTGGCCTGCCGATATCTATCAATGGGAGATGAAGAACC AACAAGGTGAACGCTATACCCTCATTGGCGAGATCTACGATAAGGAAGAGGTGCCCACAGAGCGTCTTCTTGATGCTGGG CATAAGTTCGACACCGAAGTGGGCGAGAATATCACGCGCTACTTGGTTAAAACCGGTAACCGTGAGTTTGTTGGACTAGA TTTTCGTTGGATTTTGGCAACAGACATACTCTCACGCTCTCAGCCGAACAATATTGCGGTTATTGAACGGAGTAAAAATG GTGACTTTTATGGTTTCCCTGTCGCGATTATCGAAGATGGCGAGCGGTTAATTTCACAAAATATCGAAGCTGATTTTGAG TCATATATTGGTCGTGCGGTAGCGTTAAACGACGAGGCGCTGGATATTCAGAAAGGCGTGATTGGCTCAATTAACTATGA GTTAGAAAACTTACGTTTAGCGTCACGTCGTTACGAGTTAGATAATGCCTTAACCGATAGCCGTAAAGCTGAAATCGAAG CCGAGATTGCAAGGTTAAATGCCGAGTATCAAGTGGTAGAGAAAGAGTTCTTTGAGCTTAAGACTGAGGCGGGTAGAGAC GCCGTTGTGATCCGCGATATGCGCGGTGAAGAGGTGGTATTAAAGCTAGATACACTCTTGGATGTTACCTACACCAACCG ATTAGGTGTGATGGGCAAAATTGGCCACTGGTTTATAGGTGTGGGTAAATTTGTCAGTGATGACCCACGTGAAGCCAATA CTGAAGGGGGGGTGTTTCCTGCGATTTTTGGTACCGTGTTTATGGTCATGCTGATGGCGGTGATCGTGATGCCATTTGGT GTTATTGCCGCTATCTACTTACATGAATATGCCAAAAAAGGTCCGGTGACTAAGATGATCCGCATTGCGGTGATTAATTT AGCCGGTGTGCCGTCAATTGTTTACGGTGTATTTGGCTTAGGCTTCTTCGTTTATATGTTTGGTGGCACGTTAGATCAGC TGTTTTATCCTGAAGCACTACCTACACCGACTTTTGGCTCACCAGGTGTGCTCTGGTCGGCATTGACGCTAGCCATCTTA ACGCTACCTGTGGTGATTGTATCGACCGAAGAGGGGTTGAGCCGTATTCCAAGTTCGGTCCGTCAAGGTAGTTTGGCACT CGGCGCAACAAAAGCCGAAACGCTATGGCGCATTATCATCCCTATGGCGAGCCCAGCAATGATGACCGGTTTGATTTTAG CGGTAGCGCGTGCAGCAGGTGAGGTCGCTCCATTGATGCTGGTTGGCGTAGTAAAGCTTGCGCCAACACTGCCTATTGAT ATGAACTTTCCATTTGTGCACCTAGAACGAAAGTTTATGCACTTAGGTTTTCACATTTATGATGTCGGCTTTCAAAGCCC TAACGTAGAAGCGGCGCGTCCCTTGGTATACGCTACTTCATTCCTTCTTGTCTCGGTAATTGTGGCACTTAATTTAACGG CCATTGGTGTACGAAACCACTTACGCGAAAAATATCGTTCGCTTGAGCATTAA
Upstream 100 bases:
>100_bases TAGCTCACTTTAAAGCGTAATATTATGGATGATAAGAAAATGAATTTTACTCGGACTTATACAAGTAGCCGTTCACCATC CGCTTTAAGAGGTTTAGCTA
Downstream 100 bases:
>100_bases TTGACGATTATCCTAAGCAGTAGGAAACAACATGATTTCAATAGATCAATCGGTAATGAAGACAGGTATGCTAGACCTAG AAAACTTAACCAGCGAAGAA
Product: phosphate ABC transporter inner membrane subunit PstA
Products: ADP; phosphate [Cytoplasm]; phosphate [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 550; Mature: 549
Protein sequence:
>550_residues MGKWFKSGSPWIWMTSGAVSVCLISVLGLLLLIAWRGLSYFWPADIYQWEMKNQQGERYTLIGEIYDKEEVPTERLLDAG HKFDTEVGENITRYLVKTGNREFVGLDFRWILATDILSRSQPNNIAVIERSKNGDFYGFPVAIIEDGERLISQNIEADFE SYIGRAVALNDEALDIQKGVIGSINYELENLRLASRRYELDNALTDSRKAEIEAEIARLNAEYQVVEKEFFELKTEAGRD AVVIRDMRGEEVVLKLDTLLDVTYTNRLGVMGKIGHWFIGVGKFVSDDPREANTEGGVFPAIFGTVFMVMLMAVIVMPFG VIAAIYLHEYAKKGPVTKMIRIAVINLAGVPSIVYGVFGLGFFVYMFGGTLDQLFYPEALPTPTFGSPGVLWSALTLAIL TLPVVIVSTEEGLSRIPSSVRQGSLALGATKAETLWRIIIPMASPAMMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID MNFPFVHLERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAIGVRNHLREKYRSLEH
Sequences:
>Translated_550_residues MGKWFKSGSPWIWMTSGAVSVCLISVLGLLLLIAWRGLSYFWPADIYQWEMKNQQGERYTLIGEIYDKEEVPTERLLDAG HKFDTEVGENITRYLVKTGNREFVGLDFRWILATDILSRSQPNNIAVIERSKNGDFYGFPVAIIEDGERLISQNIEADFE SYIGRAVALNDEALDIQKGVIGSINYELENLRLASRRYELDNALTDSRKAEIEAEIARLNAEYQVVEKEFFELKTEAGRD AVVIRDMRGEEVVLKLDTLLDVTYTNRLGVMGKIGHWFIGVGKFVSDDPREANTEGGVFPAIFGTVFMVMLMAVIVMPFG VIAAIYLHEYAKKGPVTKMIRIAVINLAGVPSIVYGVFGLGFFVYMFGGTLDQLFYPEALPTPTFGSPGVLWSALTLAIL TLPVVIVSTEEGLSRIPSSVRQGSLALGATKAETLWRIIIPMASPAMMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID MNFPFVHLERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAIGVRNHLREKYRSLEH >Mature_549_residues GKWFKSGSPWIWMTSGAVSVCLISVLGLLLLIAWRGLSYFWPADIYQWEMKNQQGERYTLIGEIYDKEEVPTERLLDAGH KFDTEVGENITRYLVKTGNREFVGLDFRWILATDILSRSQPNNIAVIERSKNGDFYGFPVAIIEDGERLISQNIEADFES YIGRAVALNDEALDIQKGVIGSINYELENLRLASRRYELDNALTDSRKAEIEAEIARLNAEYQVVEKEFFELKTEAGRDA VVIRDMRGEEVVLKLDTLLDVTYTNRLGVMGKIGHWFIGVGKFVSDDPREANTEGGVFPAIFGTVFMVMLMAVIVMPFGV IAAIYLHEYAKKGPVTKMIRIAVINLAGVPSIVYGVFGLGFFVYMFGGTLDQLFYPEALPTPTFGSPGVLWSALTLAILT LPVVIVSTEEGLSRIPSSVRQGSLALGATKAETLWRIIIPMASPAMMTGLILAVARAAGEVAPLMLVGVVKLAPTLPIDM NFPFVHLERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAIGVRNHLREKYRSLEH
Specific function: Part of the binding-protein-dependent transport system yqgGHIJK. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0581
COG function: function code P; ABC-type phosphate transport system, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1790163, Length=179, Percent_Identity=34.6368715083799, Blast_Score=82, Evalue=7e-17, Organism=Escherichia coli, GI1790164, Length=187, Percent_Identity=31.5508021390374, Blast_Score=68, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 - InterPro: IPR005672 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 61160; Mature: 61029
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKWFKSGSPWIWMTSGAVSVCLISVLGLLLLIAWRGLSYFWPADIYQWEMKNQQGERYT CCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEHHCCCCCCEEE LIGEIYDKEEVPTERLLDAGHKFDTEVGENITRYLVKTGNREFVGLDFRWILATDILSRS EEEEHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC QPNNIAVIERSKNGDFYGFPVAIIEDGERLISQNIEADFESYIGRAVALNDEALDIQKGV CCCCEEEEEECCCCCEEECEEEEECCCHHHHHCCCCHHHHHHCCEEEEECCCHHHHHCCC IGSINYELENLRLASRRYELDNALTDSRKAEIEAEIARLNAEYQVVEKEFFELKTEAGRD CCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC AVVIRDMRGEEVVLKLDTLLDVTYTNRLGVMGKIGHWFIGVGKFVSDDPREANTEGGVFP EEEEEECCCCEEEEEEEHHHEEHCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCHH AIFGTVFMVMLMAVIVMPFGVIAAIYLHEYAKKGPVTKMIRIAVINLAGVPSIVYGVFGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH GFFVYMFGGTLDQLFYPEALPTPTFGSPGVLWSALTLAILTLPVVIVSTEEGLSRIPSSV HHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECHHHHHHCHHHH RQGSLALGATKAETLWRIIIPMASPAMMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID HCCCEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC MNFPFVHLERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAIGVRNH CCCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LREKYRSLEH HHHHHHHCCC >Mature Secondary Structure GKWFKSGSPWIWMTSGAVSVCLISVLGLLLLIAWRGLSYFWPADIYQWEMKNQQGERYT CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHEEEHHCCCCCCEEE LIGEIYDKEEVPTERLLDAGHKFDTEVGENITRYLVKTGNREFVGLDFRWILATDILSRS EEEEHHCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCC QPNNIAVIERSKNGDFYGFPVAIIEDGERLISQNIEADFESYIGRAVALNDEALDIQKGV CCCCEEEEEECCCCCEEECEEEEECCCHHHHHCCCCHHHHHHCCEEEEECCCHHHHHCCC IGSINYELENLRLASRRYELDNALTDSRKAEIEAEIARLNAEYQVVEKEFFELKTEAGRD CCCCCEEHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCC AVVIRDMRGEEVVLKLDTLLDVTYTNRLGVMGKIGHWFIGVGKFVSDDPREANTEGGVFP EEEEEECCCCEEEEEEEHHHEEHCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCHH AIFGTVFMVMLMAVIVMPFGVIAAIYLHEYAKKGPVTKMIRIAVINLAGVPSIVYGVFGL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHH GFFVYMFGGTLDQLFYPEALPTPTFGSPGVLWSALTLAILTLPVVIVSTEEGLSRIPSSV HHHHHHHCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCEEEEECHHHHHHCHHHH RQGSLALGATKAETLWRIIIPMASPAMMTGLILAVARAAGEVAPLMLVGVVKLAPTLPID HCCCEEECCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCC MNFPFVHLERKFMHLGFHIYDVGFQSPNVEAARPLVYATSFLLVSVIVALNLTAIGVRNH CCCCCHHHHHHHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LREKYRSLEH HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; phosphate [Periplasm]; H2O [C]
Specific reaction: ATP + phosphate [Periplasm] + H2O = ADP + phosphate [Cytoplasm] + phosphate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8760913; 8969508; 9384377 [H]