| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
Click here to switch to the map view.
The map label for this gene is 167624631
Identifier: 167624631
GI number: 167624631
Start: 3292187
End: 3294160
Strand: Reverse
Name: 167624631
Synonym: Shal_2713
Alternate gene names: NA
Gene position: 3294160-3292187 (Counterclockwise)
Preceding gene: 167624632
Following gene: 167624629
Centisome position: 63.02
GC content: 46.56
Gene sequence:
>1974_bases ATGGCAAGAATGATAAGTTTTGGGACACCTGTTAACGATGCCGAACGTTGGGCATTCTCCTTGTTAGCTGATGAGCTCCC AGAAGATTATATCTTACTGACCAATGTTGAAATCCCGACTAAATCGGGCCAAGCCATGGAAGTCGATGCGCTGGTGATCG GCGAGTGGGGCGTATACGTTGTCGATGTGAAGGGCTATATTGGCCGTCTAGATGCGGGTTTGCATGCATGGTCGCTAGAT GGCCGCGAAGTTGATAATAGCTTAGCAAAGGCTAATTATGTCGCACGTGTCTTGGCGGGCAACGTCAAGCACAAAATCCC TGTCGGAGTTTACGCTCCTTGGTGCCAAGGCATGGTGTTTGTGACTGGGCGTAAAGGTGAAGAGATCGAGCTTGAAAAAC AGCAAGGCTCACTGAGTATTTATACGCCTAAGCAAATTGTTGAGGCATTAACCAAGGAGTGGGGGCTCACTGCACCAAGA AAGCATCAAGTCACCGATACCCAGAAAGAGTTGGTTTTGGAAACGATAGGTCAAGTTGCAATTGTTGAGAAACGCAATAA TAAGATCCAAGACTTTACTAAACTTAAATGTTTGTTTATTCAAAGCGGGCTAGAAGTTTGGCAGGCAGAGTATAACCCTG GCGAATGGACTGCGCCTTGGTTGCTAAAGGTACTGATCCCAACACAGTTTACTGATAGCGAACAGTCTGAGACTCATGAA GCTCAACTTAGAAGTGAGTTTCAGAGGTTACAATCTTTATCTGGCTGCTGTGGTGTTCCCTATTGTGCACCCCTTATTCA AGATGGTGAGCAGTTAGTACTTCCTATCCGTATGCCCCGCGGTGTACCACTCAATGTGCTCCAGTCTGAGCAGATGACAA CTTACCAACTGCTTGAAGTGTTACGCCGCAGTGTGACGGGGTTACAACAGATCCATCGCCGTGGCTTTACCGTGGGCGGC TGGACCAGTAATTGTATCTTTGTCTCTGACATGGGCGATGTCGAGTTTATTGATATTAAAGATAATGTTAGCAGCAGCGA TGATATTAAAGCCTATGCTGAAGGCTTCTTGGCGATTGCAGAGCAAACCCAACAACCTCGAGTTTACCAATGGTATCGAG AGGCCGTCGCTGGAGGTACAACCGACTTGGATGCACTGCGTAGCGACCTGTCGGCGTTGATTGACCATGGTGTATGCGAC ACTGTGCCAGAGAAGATAGAGATAACCGCTGGAGCAATTGTTGACCACCACTTCAGATTAGAACAGTTTATTGCTGCCAC TGAAACCAGCCAGTTCTGGCGTGCAACACATCTGCAGGGCCAATATCAATGCGGCATATCGATTTACAGTCGAGTCGAAG CCAATTGGCCGACGCTGAGTAATATTTACCGCAGCTTAGCCAAAATATACCACCCGCATATTGAAAAGGTACTGGCTTTT GGTCAGCTACCGCAAAGTGAAAACCTGTTTATTGCAAGGGCGTGGGAATATGGCGTCTCTATTGATGAGCTTGAGGAGAT CCGCCTCGGTCAGCCTTTGATGTGGTTTACTCAGTTGCTGACGGGTCTGCAATACATGCACCAAATGGATATCTATCACG GCGCAATTTGTCCAAAAAATATCATCTGTAATCCGAATAAAGCGATATTGGTTAACTTTGGTATCGGGCTCGATATTGCC GCTAGCCATTATGCTTCTCAGTATGCAGATCCAACGCTATGGGAAGTTGAAGGCGAAGCTGAGAGGGATCTTTATGGCTT AGTCGCCAGCTTCATAGATGCGATGGCGCCCGAGAGCTTAAAAGGGGACTTATGCCAATCAGGTATTATTAATGCGTTGG AAGCGTTTGATAGAGAGTGGTTCGGTGAAGCACTTTATGACGTTTGCCATAAAGTGCTTAACTTTGACTTGAATGTTCAT GCTGGTATGAACTATTTAGAGATGTTTGACTTAGCTGAAAATGACGTCATCTAA
Upstream 100 bases:
>100_bases ATTTTTAAAATAAGCCACTTATATAAGTGGCTTTTTTGTGCCTATAAGATGAGAATGTTGTTAGTTTATCTAAGAATAAT TGCCACCGAAGGAGAAAAGA
Downstream 100 bases:
>100_bases TAGCAACCAGTATAAGGCTGATGGCCATCAGCGGCACCGAGATTAATGGTGCCGATAAGGGCTAAAAAGTTCGAGTAGCC AGTCGATAAAAGATTGCACT
Product: serine/threonine protein kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 657; Mature: 656
Protein sequence:
>657_residues MARMISFGTPVNDAERWAFSLLADELPEDYILLTNVEIPTKSGQAMEVDALVIGEWGVYVVDVKGYIGRLDAGLHAWSLD GREVDNSLAKANYVARVLAGNVKHKIPVGVYAPWCQGMVFVTGRKGEEIELEKQQGSLSIYTPKQIVEALTKEWGLTAPR KHQVTDTQKELVLETIGQVAIVEKRNNKIQDFTKLKCLFIQSGLEVWQAEYNPGEWTAPWLLKVLIPTQFTDSEQSETHE AQLRSEFQRLQSLSGCCGVPYCAPLIQDGEQLVLPIRMPRGVPLNVLQSEQMTTYQLLEVLRRSVTGLQQIHRRGFTVGG WTSNCIFVSDMGDVEFIDIKDNVSSSDDIKAYAEGFLAIAEQTQQPRVYQWYREAVAGGTTDLDALRSDLSALIDHGVCD TVPEKIEITAGAIVDHHFRLEQFIAATETSQFWRATHLQGQYQCGISIYSRVEANWPTLSNIYRSLAKIYHPHIEKVLAF GQLPQSENLFIARAWEYGVSIDELEEIRLGQPLMWFTQLLTGLQYMHQMDIYHGAICPKNIICNPNKAILVNFGIGLDIA ASHYASQYADPTLWEVEGEAERDLYGLVASFIDAMAPESLKGDLCQSGIINALEAFDREWFGEALYDVCHKVLNFDLNVH AGMNYLEMFDLAENDVI
Sequences:
>Translated_657_residues MARMISFGTPVNDAERWAFSLLADELPEDYILLTNVEIPTKSGQAMEVDALVIGEWGVYVVDVKGYIGRLDAGLHAWSLD GREVDNSLAKANYVARVLAGNVKHKIPVGVYAPWCQGMVFVTGRKGEEIELEKQQGSLSIYTPKQIVEALTKEWGLTAPR KHQVTDTQKELVLETIGQVAIVEKRNNKIQDFTKLKCLFIQSGLEVWQAEYNPGEWTAPWLLKVLIPTQFTDSEQSETHE AQLRSEFQRLQSLSGCCGVPYCAPLIQDGEQLVLPIRMPRGVPLNVLQSEQMTTYQLLEVLRRSVTGLQQIHRRGFTVGG WTSNCIFVSDMGDVEFIDIKDNVSSSDDIKAYAEGFLAIAEQTQQPRVYQWYREAVAGGTTDLDALRSDLSALIDHGVCD TVPEKIEITAGAIVDHHFRLEQFIAATETSQFWRATHLQGQYQCGISIYSRVEANWPTLSNIYRSLAKIYHPHIEKVLAF GQLPQSENLFIARAWEYGVSIDELEEIRLGQPLMWFTQLLTGLQYMHQMDIYHGAICPKNIICNPNKAILVNFGIGLDIA ASHYASQYADPTLWEVEGEAERDLYGLVASFIDAMAPESLKGDLCQSGIINALEAFDREWFGEALYDVCHKVLNFDLNVH AGMNYLEMFDLAENDVI >Mature_656_residues ARMISFGTPVNDAERWAFSLLADELPEDYILLTNVEIPTKSGQAMEVDALVIGEWGVYVVDVKGYIGRLDAGLHAWSLDG REVDNSLAKANYVARVLAGNVKHKIPVGVYAPWCQGMVFVTGRKGEEIELEKQQGSLSIYTPKQIVEALTKEWGLTAPRK HQVTDTQKELVLETIGQVAIVEKRNNKIQDFTKLKCLFIQSGLEVWQAEYNPGEWTAPWLLKVLIPTQFTDSEQSETHEA QLRSEFQRLQSLSGCCGVPYCAPLIQDGEQLVLPIRMPRGVPLNVLQSEQMTTYQLLEVLRRSVTGLQQIHRRGFTVGGW TSNCIFVSDMGDVEFIDIKDNVSSSDDIKAYAEGFLAIAEQTQQPRVYQWYREAVAGGTTDLDALRSDLSALIDHGVCDT VPEKIEITAGAIVDHHFRLEQFIAATETSQFWRATHLQGQYQCGISIYSRVEANWPTLSNIYRSLAKIYHPHIEKVLAFG QLPQSENLFIARAWEYGVSIDELEEIRLGQPLMWFTQLLTGLQYMHQMDIYHGAICPKNIICNPNKAILVNFGIGLDIAA SHYASQYADPTLWEVEGEAERDLYGLVASFIDAMAPESLKGDLCQSGIINALEAFDREWFGEALYDVCHKVLNFDLNVHA GMNYLEMFDLAENDVI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 73841; Mature: 73710
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: PS50965 NERD ; PS50011 PROTEIN_KINASE_DOM ; PS00251 TNF_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARMISFGTPVNDAERWAFSLLADELPEDYILLTNVEIPTKSGQAMEVDALVIGEWGVYV CCCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCEEE VDVKGYIGRLDAGLHAWSLDGREVDNSLAKANYVARVLAGNVKHKIPVGVYAPWCQGMVF EECCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHCCEEE VTGRKGEEIELEKQQGSLSIYTPKQIVEALTKEWGLTAPRKHQVTDTQKELVLETIGQVA EECCCCCEEEEECCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCEE IVEKRNNKIQDFTKLKCLFIQSGLEVWQAEYNPGEWTAPWLLKVLIPTQFTDSEQSETHE EEECCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH AQLRSEFQRLQSLSGCCGVPYCAPLIQDGEQLVLPIRMPRGVPLNVLQSEQMTTYQLLEV HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCCHHHHHHHH LRRSVTGLQQIHRRGFTVGGWTSNCIFVSDMGDVEFIDIKDNVSSSDDIKAYAEGFLAIA HHHHHHHHHHHHHCCCEECCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHH EQTQQPRVYQWYREAVAGGTTDLDALRSDLSALIDHGVCDTVPEKIEITAGAIVDHHFRL HHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHH EQFIAATETSQFWRATHLQGQYQCGISIYSRVEANWPTLSNIYRSLAKIYHPHIEKVLAF HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH GQLPQSENLFIARAWEYGVSIDELEEIRLGQPLMWFTQLLTGLQYMHQMDIYHGAICPKN CCCCCCCCEEEEEEHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IICNPNKAILVNFGIGLDIAASHYASQYADPTLWEVEGEAERDLYGLVASFIDAMAPESL EEECCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHH KGDLCQSGIINALEAFDREWFGEALYDVCHKVLNFDLNVHAGMNYLEMFDLAENDVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCC >Mature Secondary Structure ARMISFGTPVNDAERWAFSLLADELPEDYILLTNVEIPTKSGQAMEVDALVIGEWGVYV CCEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEEEEEECCCEEE VDVKGYIGRLDAGLHAWSLDGREVDNSLAKANYVARVLAGNVKHKIPVGVYAPWCQGMVF EECCCHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECHHHCCEEE VTGRKGEEIELEKQQGSLSIYTPKQIVEALTKEWGLTAPRKHQVTDTQKELVLETIGQVA EECCCCCEEEEECCCCCEEEECHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCEE IVEKRNNKIQDFTKLKCLFIQSGLEVWQAEYNPGEWTAPWLLKVLIPTQFTDSEQSETHE EEECCCCCHHHHHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHH AQLRSEFQRLQSLSGCCGVPYCAPLIQDGEQLVLPIRMPRGVPLNVLQSEQMTTYQLLEV HHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEEEEECCCCCCHHHHCCCCCHHHHHHHH LRRSVTGLQQIHRRGFTVGGWTSNCIFVSDMGDVEFIDIKDNVSSSDDIKAYAEGFLAIA HHHHHHHHHHHHHCCCEECCCCCCEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHH EQTQQPRVYQWYREAVAGGTTDLDALRSDLSALIDHGVCDTVPEKIEITAGAIVDHHFRL HHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHHHHHH EQFIAATETSQFWRATHLQGQYQCGISIYSRVEANWPTLSNIYRSLAKIYHPHIEKVLAF HHHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH GQLPQSENLFIARAWEYGVSIDELEEIRLGQPLMWFTQLLTGLQYMHQMDIYHGAICPKN CCCCCCCCEEEEEEHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC IICNPNKAILVNFGIGLDIAASHYASQYADPTLWEVEGEAERDLYGLVASFIDAMAPESL EEECCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCHH KGDLCQSGIINALEAFDREWFGEALYDVCHKVLNFDLNVHAGMNYLEMFDLAENDVI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA