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The map label for this gene is nrdD [H]

Identifier: 167624610

GI number: 167624610

Start: 3263900

End: 3266017

Strand: Reverse

Name: nrdD [H]

Synonym: Shal_2692

Alternate gene names: 167624610

Gene position: 3266017-3263900 (Counterclockwise)

Preceding gene: 167624611

Following gene: 167624609

Centisome position: 62.48

GC content: 45.47

Gene sequence:

>2118_bases
ATGCCAGTGGTTATTAAACGGGATGGTTACCGTACGCCTTTTGACGAAACAAGGATTAAAGACGCCGTGATAGCAGCTGC
TAACTCGGCAGGTATTGAGTGCGCTGAATACGCACAACAGATTGCTGAAAATGTAAGAGAAAGTGTGTCGCAGTTAGCTG
AAGTTAACATTCACGATCTGCAAGACACAGTTGAAAACTTGCTGATGGAAGGGCCGTACAAATCTTTGGCGCGCGTTTAC
ATCGAATACCGTCACGATAGAGATACCAATCGTGAAGTTAGCAGTCGTTTGAATAAAGAGATCCGTGGTTTGGTTGAGCA
AAGCAATGCGGCTTTGTTGAACGAGAACGCCAATAAAGACTCTAAAGTGATCCCAACTCAGCGCGACTTGCTTGCGGGTA
TCGTGGCCAAGCATTATGCCAAATGCCACATTTTACCTAAAGATGTCGTTGCCGCACATGAGTCTGGTGAGATCCACTAC
CACGACCTAGATTACGCGCCATTCTTCCCGATGTTTAACTGTATGCTTATTGACCTAAGTGGCATGTTAACTCAGGGCTT
TAAGATGGGTAACGCTGAAATTGAAACCCCTAAGTCAATTTCAACCGCGACAGCAGTGACGGCGCAAATTATTGCGCAAG
TGGCAAGCCATATCTATGGCGGTACGACGATTAACCGTATCGATGAGGTCTTGGCACCCTTTGTCGCTAAGAGTTACGAC
AAGCACTACCAAGTGGCATTAAACTGGGGCATTACTGACGCGAAAGCGTTTGCAACGGCGCAAACTGAAAAAGAGTGTCA
TGATGCATTCCAGTCACTAGAGTATGAAGTGAACACGCTACATACGGCAAATGGTCAAACCCCATTTGTGACCTTTGGTT
TTGGTTTAGGCACCTCTTGGGAGTCACGCTTAATTCAACAGTCCATGATGACAGTACGTATTGCAGGTTTGGGTAAGAAC
CGTAAAACAGCGGTATTCCCAAAACTTGTTTTCGCTATTCGTGATGGCATCAACCATAAAGCGGGTGATTGTAACTACGA
CATCAAGCAGTTGGCACTTAAGTGCGCTTCAACGCGTATGTATCCCGATATTCTTAACTATGAACAAGTTGAGAAAGTGA
CGGGTTCATTTAAGACGCCAATGGGCTGCCGTAGCTTCTTAGGTACGTTCGAGCAAGATGGTGAGCTTGTGCATGAAGGC
CGCAACAACTTAGGTGTTGTGAGTTTGAACCTGCCACGCATTGCGCTAGAAGCAAAAGGTGATGAAGCTGAGTTTTATCG
TATTCTTGACACACGTTTAGCCATGTCTCGTAAGGCCTTGGATACTCGTATCTCGCGTCTTGAAGGTGTTAAGGCGCGTG
TCGCTCCTATCCTTTATATGGAAGGTGCTTGCGGCGTACGTTTACGTGCCGATGACGATATTTCTGAGATCTTCAAAAAT
GGCCGTGCATCTATTTCATTAGGCTACATCGGTCTGCATGAAACCATTAATGCGCTTTATGGCACTGAAGAGCATGTTTA
CGACAGTGAAATGCTACGTGAAAAAGCCATTGCGGTTATTAAGTACATGAAGCAAGCAACTGACAGCTGGAAAGCTGAGT
CTGGTTACGCATTTAGTTTGTACAGCACGCCAAGTGAAAACTTGTGTAGCCGTTTCTGTGCACTCGATACCAAGGTATTT
GGTGTCGTTGATGGGGTTACCGCTAAAGGTTACTATACCAACAGCTTCCATTTGGACGTTGAAAAGCAAGTTAACCCATA
CGACAAGATTGATTTTGAACAGCCATATCCTGAGATAGCTAACGGCGGTTTCATCTGTTACGGCGAATTCCCTAACATGC
AAAATAACGTAGAAGCGTTAGAAAACGTGTGGGACTACAGTTATAGCAGAGTGCCATATTACGGCACTAACACACCTATC
GATGAGTGTTACGATTGTGGCTTTACTGGTGAGTTTAGCTGTACCAGTAAAGGTTTCACTTGCCCTAAGTGTGGCAACCA
TGAGCCAAGCCGCGTGTCAGTGACTCGTCGTGTATGTGGTTATTTAGGTAGCCCTGATGCAAGACCGTTTAACTATGGTA
AGCAAGAAGAAGTTAAGCGCCGCGTTAAGCATCTATAA

Upstream 100 bases:

>100_bases
CATTATTTTATAGCTTAATACGCCACATATTGTGATTTATTGAAAAAGTAGCACTATATATAGTGTTACTTTGATGAGCG
AGCTGAAGAGGATTTATACA

Downstream 100 bases:

>100_bases
TACCTAATTTGTAGCGCAATCATCGCGTTCAAGTAATGACTGAAATATGAAAGGTGCTGATATCAGCACCTTTTTTATCT
CCCAAGCTGAAACGAGTTTA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 705; Mature: 704

Protein sequence:

>705_residues
MPVVIKRDGYRTPFDETRIKDAVIAAANSAGIECAEYAQQIAENVRESVSQLAEVNIHDLQDTVENLLMEGPYKSLARVY
IEYRHDRDTNREVSSRLNKEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHY
HDLDYAPFFPMFNCMLIDLSGMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQVALNWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMMTVRIAGLGKN
RKTAVFPKLVFAIRDGINHKAGDCNYDIKQLALKCASTRMYPDILNYEQVEKVTGSFKTPMGCRSFLGTFEQDGELVHEG
RNNLGVVSLNLPRIALEAKGDEAEFYRILDTRLAMSRKALDTRISRLEGVKARVAPILYMEGACGVRLRADDDISEIFKN
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIAVIKYMKQATDSWKAESGYAFSLYSTPSENLCSRFCALDTKVF
GVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPEIANGGFICYGEFPNMQNNVEALENVWDYSYSRVPYYGTNTPI
DECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL

Sequences:

>Translated_705_residues
MPVVIKRDGYRTPFDETRIKDAVIAAANSAGIECAEYAQQIAENVRESVSQLAEVNIHDLQDTVENLLMEGPYKSLARVY
IEYRHDRDTNREVSSRLNKEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHY
HDLDYAPFFPMFNCMLIDLSGMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
KHYQVALNWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMMTVRIAGLGKN
RKTAVFPKLVFAIRDGINHKAGDCNYDIKQLALKCASTRMYPDILNYEQVEKVTGSFKTPMGCRSFLGTFEQDGELVHEG
RNNLGVVSLNLPRIALEAKGDEAEFYRILDTRLAMSRKALDTRISRLEGVKARVAPILYMEGACGVRLRADDDISEIFKN
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIAVIKYMKQATDSWKAESGYAFSLYSTPSENLCSRFCALDTKVF
GVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPEIANGGFICYGEFPNMQNNVEALENVWDYSYSRVPYYGTNTPI
DECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL
>Mature_704_residues
PVVIKRDGYRTPFDETRIKDAVIAAANSAGIECAEYAQQIAENVRESVSQLAEVNIHDLQDTVENLLMEGPYKSLARVYI
EYRHDRDTNREVSSRLNKEIRGLVEQSNAALLNENANKDSKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHYH
DLDYAPFFPMFNCMLIDLSGMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYDK
HYQVALNWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSWESRLIQQSMMTVRIAGLGKNR
KTAVFPKLVFAIRDGINHKAGDCNYDIKQLALKCASTRMYPDILNYEQVEKVTGSFKTPMGCRSFLGTFEQDGELVHEGR
NNLGVVSLNLPRIALEAKGDEAEFYRILDTRLAMSRKALDTRISRLEGVKARVAPILYMEGACGVRLRADDDISEIFKNG
RASISLGYIGLHETINALYGTEEHVYDSEMLREKAIAVIKYMKQATDSWKAESGYAFSLYSTPSENLCSRFCALDTKVFG
VVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPEIANGGFICYGEFPNMQNNVEALENVWDYSYSRVPYYGTNTPID
ECYDCGFTGEFSCTSKGFTCPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=705, Percent_Identity=78.1560283687943, Blast_Score=1172, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 78880; Mature: 78749

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVVIKRDGYRTPFDETRIKDAVIAAANSAGIECAEYAQQIAENVRESVSQLAEVNIHDL
CCEEEECCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QDTVENLLMEGPYKSLARVYIEYRHDRDTNREVSSRLNKEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHYHDLDYAPFFPMFNCMLIDLS
CCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
GMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQVALNWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMMTVRIAGLGKNRKTAVFPKLVFAIRDGINHKAGDCNYDIKQLALKCASTRM
HHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
YPDILNYEQVEKVTGSFKTPMGCRSFLGTFEQDGELVHEGRNNLGVVSLNLPRIALEAKG
CHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCEEEEECCC
DEAEFYRILDTRLAMSRKALDTRISRLEGVKARVAPILYMEGACGVRLRADDDISEIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCEEEECCCCHHHHHHC
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIAVIKYMKQATDSWKAESGYAFSL
CCCEEEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
YSTPSENLCSRFCALDTKVFGVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPEIA
ECCCHHHHHHHHHHHCHHHHHEECCCEECCEEECEEEEEECCCCCCCCCCCCCCCCHHHC
NGGFICYGEFPNMQNNVEALENVWDYSYSRVPYYGTNTPIDECYDCGFTGEFSCTSKGFT
CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure 
PVVIKRDGYRTPFDETRIKDAVIAAANSAGIECAEYAQQIAENVRESVSQLAEVNIHDL
CEEEECCCCCCCCHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH
QDTVENLLMEGPYKSLARVYIEYRHDRDTNREVSSRLNKEIRGLVEQSNAALLNENANKD
HHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCCC
SKVIPTQRDLLAGIVAKHYAKCHILPKDVVAAHESGEIHYHDLDYAPFFPMFNCMLIDLS
CCCCCCHHHHHHHHHHHHHHHEECCCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHH
GMLTQGFKMGNAEIETPKSISTATAVTAQIIAQVASHIYGGTTINRIDEVLAPFVAKSYD
HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
KHYQVALNWGITDAKAFATAQTEKECHDAFQSLEYEVNTLHTANGQTPFVTFGFGLGTSW
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCEEEEECCCCCCH
ESRLIQQSMMTVRIAGLGKNRKTAVFPKLVFAIRDGINHKAGDCNYDIKQLALKCASTRM
HHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCC
YPDILNYEQVEKVTGSFKTPMGCRSFLGTFEQDGELVHEGRNNLGVVSLNLPRIALEAKG
CHHHCCHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHCCCCCEEEEEECCCEEEEECCC
DEAEFYRILDTRLAMSRKALDTRISRLEGVKARVAPILYMEGACGVRLRADDDISEIFKN
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCEEEEECCCCCEEEECCCCHHHHHHC
GRASISLGYIGLHETINALYGTEEHVYDSEMLREKAIAVIKYMKQATDSWKAESGYAFSL
CCCEEEEEEEEHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEE
YSTPSENLCSRFCALDTKVFGVVDGVTAKGYYTNSFHLDVEKQVNPYDKIDFEQPYPEIA
ECCCHHHHHHHHHHHCHHHHHEECCCEECCEEECEEEEEECCCCCCCCCCCCCCCCHHHC
NGGFICYGEFPNMQNNVEALENVWDYSYSRVPYYGTNTPIDECYDCGFTGEFSCTSKGFT
CCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCC
CPKCGNHEPSRVSVTRRVCGYLGSPDARPFNYGKQEEVKRRVKHL
CCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]