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The map label for this gene is 167624575

Identifier: 167624575

GI number: 167624575

Start: 3221826

End: 3222350

Strand: Reverse

Name: 167624575

Synonym: Shal_2656

Alternate gene names: NA

Gene position: 3222350-3221826 (Counterclockwise)

Preceding gene: 167624576

Following gene: 167624573

Centisome position: 61.65

GC content: 45.33

Gene sequence:

>525_bases
ATGAGTATGAGTAGTTTTGTTGCAATTGGCCTTGTAAACCCAAAAAGTCCGACCAATGTTGGTGGCATTATGCGCGCCGT
GGGTTGCTATAGCGCTGATGCAGTTTTCTATACAGGTAAACGGTATGAGTTAGCGTCCACTAACGGCAGTGCTCAATACA
ATACTGACACTAAGCGTGCGAGTAGTTCAATTCCACTTAGCAAAGTGGAATCATTACTCGATGCGATAGAACCTGATGTG
AAAGTGGTGTGTGTCGATCTGGTCGAAGGAGCGATTCCTTTACCTGAGTTTGAGCATCCAGAAAAAGCGATTTATATTTT
TGGCCCAGAAGATGGCACCATTAGTCAGCAGGTTGTTAACGGTGCCGATGCCGTGGTTTACGTGCCAACCGTGGGTTGCA
TGAATTTAGCGGCGTCAGTAAACGTTTTGCTTTATGACCGATTGGCTAAGTCTTCATCTATCGCCAGCGATGAGCTTATT
AGAAGTAGCCGCGATACTAACAATCGAGTTAGGGTAAAGCGTTAA

Upstream 100 bases:

>100_bases
GCTCAATTGAGTGTAAAATTAGCGGCATAAGTACTTTTCTTAAGTGTTCTATATCGGTATTAAGCGTTAAATGTATAGGT
TAATGAGAGTTTAAGCTTTT

Downstream 100 bases:

>100_bases
CTTTTGTTGTTTTAGAAGCCACTGTAGAGTGGCTTTTCTATTTTCGGCTAACCACCGAGTTTGGTGGTGGGGCCCTGAAA
TATTGAGGGTTAAAGGCCCG

Product: tRNA/rRNA methyltransferase SpoU

Products: NA

Alternate protein names: RNA Methyltransferase; 23S RRNA Methyltransferase; RNA Methyltransferase TrmH Family; TrmH Family RNA Methyltransferase; Cold-Shock RNA Methyltransferase; rRNA Methylase; TRNA/RRNA MethyltransferaU; SpoU RRNA Methylase Family Protein; rRNA Methyltransferase; SpoU Class RRNA Methylase

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MSMSSFVAIGLVNPKSPTNVGGIMRAVGCYSADAVFYTGKRYELASTNGSAQYNTDTKRASSSIPLSKVESLLDAIEPDV
KVVCVDLVEGAIPLPEFEHPEKAIYIFGPEDGTISQQVVNGADAVVYVPTVGCMNLAASVNVLLYDRLAKSSSIASDELI
RSSRDTNNRVRVKR

Sequences:

>Translated_174_residues
MSMSSFVAIGLVNPKSPTNVGGIMRAVGCYSADAVFYTGKRYELASTNGSAQYNTDTKRASSSIPLSKVESLLDAIEPDV
KVVCVDLVEGAIPLPEFEHPEKAIYIFGPEDGTISQQVVNGADAVVYVPTVGCMNLAASVNVLLYDRLAKSSSIASDELI
RSSRDTNNRVRVKR
>Mature_173_residues
SMSSFVAIGLVNPKSPTNVGGIMRAVGCYSADAVFYTGKRYELASTNGSAQYNTDTKRASSSIPLSKVESLLDAIEPDVK
VVCVDLVEGAIPLPEFEHPEKAIYIFGPEDGTISQQVVNGADAVVYVPTVGCMNLAASVNVLLYDRLAKSSSIASDELIR
SSRDTNNRVRVKR

Specific function: Unknown

COG id: COG0219

COG function: function code J; Predicted rRNA methylase (SpoU class)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18636; Mature: 18505

Theoretical pI: Translated: 5.24; Mature: 5.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMSSFVAIGLVNPKSPTNVGGIMRAVGCYSADAVFYTGKRYELASTNGSAQYNTDTKRA
CCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCEECCCHHHC
SSSIPLSKVESLLDAIEPDVKVVCVDLVEGAIPLPEFEHPEKAIYIFGPEDGTISQQVVN
CCCCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHC
GADAVVYVPTVGCMNLAASVNVLLYDRLAKSSSIASDELIRSSRDTNNRVRVKR
CCCEEEEECCCCHHHHHHHHHHEEHHHHHCCCCCCHHHHHHHCCCCCCEEEEEC
>Mature Secondary Structure 
SMSSFVAIGLVNPKSPTNVGGIMRAVGCYSADAVFYTGKRYELASTNGSAQYNTDTKRA
CCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCEEEEECCCCCCEECCCHHHC
SSSIPLSKVESLLDAIEPDVKVVCVDLVEGAIPLPEFEHPEKAIYIFGPEDGTISQQVVN
CCCCCHHHHHHHHHHHCCCCEEEEEEHHCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHC
GADAVVYVPTVGCMNLAASVNVLLYDRLAKSSSIASDELIRSSRDTNNRVRVKR
CCCEEEEECCCCHHHHHHHHHHEEHHHHHCCCCCCHHHHHHHCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA