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The map label for this gene is yciO [H]

Identifier: 167624539

GI number: 167624539

Start: 3178391

End: 3179011

Strand: Reverse

Name: yciO [H]

Synonym: Shal_2618

Alternate gene names: 167624539

Gene position: 3179011-3178391 (Counterclockwise)

Preceding gene: 167624540

Following gene: 167624538

Centisome position: 60.82

GC content: 43.64

Gene sequence:

>621_bases
ATGAGTCAGTTTTTTTATGTGCATGAGGAAAACCCTCAAACGCGCTTAATTAGCCAAGCTGTGAACGTGATTAAAAGCGG
TGGTGTGATTGTGTATCCAACCGATTCAGGTTATGCATTAGGTTGCCTAATCGGTGATAAAAACGCGATGAGCAAAATTG
CGCGCATCAGACAGATTGATAACGATCATAATTTTTCGTTGATGTGCCGTGATCAATCTGAGCTAGCAACATACGCTCGC
GTTGATAACCAAGCTTACCGCTTGCTTAAGCAAAATACACCGGGTCCTTACACGTTTATTTTTATGGCATCGAAAGAAGT
GCCTAAACGCCTTCAAAATCCGAAAAAGAAGACAATCGGTATCCGTGTACCTGACAATGTAATAGCTCTGGCTTTGCTAG
AAGCCTTAGGTGAGCCATTAATGTCGACCAGTTTGATTTTACCGGGCCAAGAGTTTACTGAATCAGATCCTGAGCATATT
CGCGATATTCTAGAGCATCAAGTGGACTTGATTATTCACGGTGGCTATTTAGGCGAGAAGCCAACCACGGTAATTGACTT
ATCTGACGGTGAGATTGAGGTGATCCGTGAAGGCGCTGGTGACGTAACGCCATTCCTCTAA

Upstream 100 bases:

>100_bases
ATTTTCACTTTCCTGGCAGCTGGATTGAAATTGGTAAAAATATGTTCCAACCCCAAGGAGTGAACTGGGTTTGGCAATCA
GAGAAATGGAAGGTAGTACA

Downstream 100 bases:

>100_bases
AATCGATGCCGTTGTTAAAGGTCGCTGTTGTTATCAGCAAACGATAACCGCAATTGCTTTAATCTGGGAACATTTGTACC
CAAGTCACCTATAGCTGTGC

Product: Sua5/YciO/YrdC/YwlC family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 206; Mature: 205

Protein sequence:

>206_residues
MSQFFYVHEENPQTRLISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQIDNDHNFSLMCRDQSELATYAR
VDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIGIRVPDNVIALALLEALGEPLMSTSLILPGQEFTESDPEHI
RDILEHQVDLIIHGGYLGEKPTTVIDLSDGEIEVIREGAGDVTPFL

Sequences:

>Translated_206_residues
MSQFFYVHEENPQTRLISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQIDNDHNFSLMCRDQSELATYAR
VDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIGIRVPDNVIALALLEALGEPLMSTSLILPGQEFTESDPEHI
RDILEHQVDLIIHGGYLGEKPTTVIDLSDGEIEVIREGAGDVTPFL
>Mature_205_residues
SQFFYVHEENPQTRLISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQIDNDHNFSLMCRDQSELATYARV
DNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIGIRVPDNVIALALLEALGEPLMSTSLILPGQEFTESDPEHIR
DILEHQVDLIIHGGYLGEKPTTVIDLSDGEIEVIREGAGDVTPFL

Specific function: Unknown

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI87081864, Length=206, Percent_Identity=71.3592233009709, Blast_Score=311, Evalue=2e-86,
Organism=Escherichia coli, GI2367210, Length=144, Percent_Identity=29.8611111111111, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 22928; Mature: 22796

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQFFYVHEENPQTRLISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQID
CCCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCC
NDHNFSLMCRDQSELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIG
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCCCCHHEEE
IRVPDNVIALALLEALGEPLMSTSLILPGQEFTESDPEHIRDILEHQVDLIIHGGYLGEK
EECCHHHHHHHHHHHHCCHHHHCEEECCCHHHCCCCHHHHHHHHHHCEEEEEECCCCCCC
PTTVIDLSDGEIEVIREGAGDVTPFL
CCEEEEECCCCEEEEECCCCCCCCCC
>Mature Secondary Structure 
SQFFYVHEENPQTRLISQAVNVIKSGGVIVYPTDSGYALGCLIGDKNAMSKIARIRQID
CCEEEEECCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEEEECCHHHHHHHHHHHHCC
NDHNFSLMCRDQSELATYARVDNQAYRLLKQNTPGPYTFIFMASKEVPKRLQNPKKKTIG
CCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCHHHHHHCCCCHHEEE
IRVPDNVIALALLEALGEPLMSTSLILPGQEFTESDPEHIRDILEHQVDLIIHGGYLGEK
EECCHHHHHHHHHHHHCCHHHHCEEECCCHHHCCCCHHHHHHHHHHCEEEEEECCCCCCC
PTTVIDLSDGEIEVIREGAGDVTPFL
CCEEEEECCCCEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]