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The map label for this gene is ybjK [C]

Identifier: 167624503

GI number: 167624503

Start: 3128651

End: 3129328

Strand: Reverse

Name: ybjK [C]

Synonym: Shal_2582

Alternate gene names: 167624503

Gene position: 3129328-3128651 (Counterclockwise)

Preceding gene: 167624507

Following gene: 167624501

Centisome position: 59.87

GC content: 41.74

Gene sequence:

>678_bases
ATGCTTGTGCCTTTGACCTATGTGGGTCGTCAATCAAGCCGTAGCGATGGTCAAGCACGGCGTATTGCAATATTAGAAGC
AACCTTGCGCTTAATCGTAAGAGAGGGGATCCGTGGAGTTCGACATCGTGCTGTAGCTAGTGAGGCTAATGTGCCGCTAT
CTTCAACTACTTATTATTTCGATGATATTAAAGATCTTATCAGTGATTCCTTAACCTATTTTGCAGAAAAAACCTTGTGG
ATGAATAAGGTATTAGAGCATAAGAGTTACGCCTTGGTGGAGAGTGTTAGGTTGGAGCAACAAACGGCTGATGAGTCGCA
GATGAAGGCGTTTATTATCGATAATCTCAGTCAATTTATCTGTGAGCATATTAAAGAACAGTTAGCTCATCGAGACGACA
GGATCCTTGAGGTAGCGTTTCATGAAGAGGCGTTACGTAATCCGCAACTGGCGGCGGCAATCACCGCATTAGATAAAACC
TTTCTTGATAGTATTAAGCATTTTTTTGCTGATATGGGCTCAAGTTCGGCTAATGCCGATGCACATCAGGTGTTAGCGAT
TATTAAACTCCTAGAGTACCAGTATCTTATTCGAACTGATATTGATGATCACGCCTTGTTAGATATTGTCAGCTCAACAG
TCAATCATATTGTGATGGCAATAAAAAACCCAAGCTAA

Upstream 100 bases:

>100_bases
AGCTTGATCCTACTTCACACGGATAAGTGTGATTTTAATAAGTTTAAAAGTGGTTTTAGCCTGCTCAAGCAGCATATTTA
TTAGTCTAACGGGAGCCGAT

Downstream 100 bases:

>100_bases
GGCTTGGGTTTTTTATTTTACGCTAGGTGAAGTTATTGCACGTTTTCGGCATCGCTAAACTGGCCTTGGAACAGGGCTGA
AGATAGGTAACGCTCAGCTG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator TetR Family Protein; Regulatory Protein TetR; TetR Family Regulatory Protein

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MLVPLTYVGRQSSRSDGQARRIAILEATLRLIVREGIRGVRHRAVASEANVPLSSTTYYFDDIKDLISDSLTYFAEKTLW
MNKVLEHKSYALVESVRLEQQTADESQMKAFIIDNLSQFICEHIKEQLAHRDDRILEVAFHEEALRNPQLAAAITALDKT
FLDSIKHFFADMGSSSANADAHQVLAIIKLLEYQYLIRTDIDDHALLDIVSSTVNHIVMAIKNPS

Sequences:

>Translated_225_residues
MLVPLTYVGRQSSRSDGQARRIAILEATLRLIVREGIRGVRHRAVASEANVPLSSTTYYFDDIKDLISDSLTYFAEKTLW
MNKVLEHKSYALVESVRLEQQTADESQMKAFIIDNLSQFICEHIKEQLAHRDDRILEVAFHEEALRNPQLAAAITALDKT
FLDSIKHFFADMGSSSANADAHQVLAIIKLLEYQYLIRTDIDDHALLDIVSSTVNHIVMAIKNPS
>Mature_225_residues
MLVPLTYVGRQSSRSDGQARRIAILEATLRLIVREGIRGVRHRAVASEANVPLSSTTYYFDDIKDLISDSLTYFAEKTLW
MNKVLEHKSYALVESVRLEQQTADESQMKAFIIDNLSQFICEHIKEQLAHRDDRILEVAFHEEALRNPQLAAAITALDKT
FLDSIKHFFADMGSSSANADAHQVLAIIKLLEYQYLIRTDIDDHALLDIVSSTVNHIVMAIKNPS

Specific function: Unknown

COG id: COG3226

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25456; Mature: 25456

Theoretical pI: Translated: 6.03; Mature: 6.03

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVPLTYVGRQSSRSDGQARRIAILEATLRLIVREGIRGVRHRAVASEANVPLSSTTYYF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
DDIKDLISDSLTYFAEKTLWMNKVLEHKSYALVESVRLEQQTADESQMKAFIIDNLSQFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
CEHIKEQLAHRDDRILEVAFHEEALRNPQLAAAITALDKTFLDSIKHFFADMGSSSANAD
HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
AHQVLAIIKLLEYQYLIRTDIDDHALLDIVSSTVNHIVMAIKNPS
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCC
>Mature Secondary Structure
MLVPLTYVGRQSSRSDGQARRIAILEATLRLIVREGIRGVRHRAVASEANVPLSSTTYYF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
DDIKDLISDSLTYFAEKTLWMNKVLEHKSYALVESVRLEQQTADESQMKAFIIDNLSQFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
CEHIKEQLAHRDDRILEVAFHEEALRNPQLAAAITALDKTFLDSIKHFFADMGSSSANAD
HHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
AHQVLAIIKLLEYQYLIRTDIDDHALLDIVSSTVNHIVMAIKNPS
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA