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The map label for this gene is ndpA [C]

Identifier: 167624433

GI number: 167624433

Start: 3029009

End: 3030037

Strand: Reverse

Name: ndpA [C]

Synonym: Shal_2511

Alternate gene names: 167624433

Gene position: 3030037-3029009 (Counterclockwise)

Preceding gene: 167624436

Following gene: 167624432

Centisome position: 57.97

GC content: 44.12

Gene sequence:

>1029_bases
ATGAGTATTAACGTCGAACAAGCAATTATCCACTCCATTTCGCAAGATGGTGAAGGTCAACTTAGTTGTCGATTACGTCC
ACAACCTTTGCTAAACAGTCAAGCGGTTGAGGCGATGCTAGAAGAGTTGCATCAAACTTACACCACAAAGGCGGGTAAAG
GGTTTGGTCACTTTGGTATTAGTGGTGAAGATGGCGAAGCAAACACTAAGTTTGAAGACGCGCTAACCACCTATCGCAGC
GGTGAGCTTGGCTTCGTTGAGTTCTCAGGCATTGCAGGTAAGTTGTTACAAGAAGAATTGTCTAAGTATGACTTCAGTAC
TGGTGGATTCTTACTGCTATCTTGCTACACCTATATGACAAGCGACTACTTGTTTGTATCTCTGCTTAACGCAAAATCAT
CGATGACTGTACTCGATGATATGGAGTTGTCGCAAAATACCCACTTAGATCTGAACAATGTGCAACTTGCTGCGCGAATC
GATTTAACGGAGTGGCAGGCGGATCCTGACTCTAAAAAGTATATCTCTTTTGTTCGTGGCCGTGCGGGTCGTAAGGTTGC
AGATTTCTTCTTGGACTTCATGGGCTGTGTCGAAGGGGTTAATATCAAGGCACAAAATAAATCTTTAATGAACGCAGTTG
AAGATTTTGTTGGTAACAGTGAGCTGACTAAAGATGAGCGTCAGCAAGCCCGTGAGCGCGTATTCGATTATTGCACCGAA
CGTTGTGATGAAGGCGCATCAATACAGATTAAAGACTTAGCCGATGAACTCGCAGATCAAGGTGTGGACTCTTTTTATGA
TTTCGCTCAGGGCGGTGATTATGAGCTGGAAGAGGAGTTTCCTGGTGATAAACCAACCTTAAGACAGTTGAAGAAGTTCT
CAGGTACTGGTGGTGGTGTCACGTTGAGTTTTGACGGCCAACATCTTGGTGAAAGGGTGATTTATGATCCTGTATCTGAC
ACCATTATCATTAAAGGTGTACCAGCAAACCTTAAAGATCAGCTAGACCGTCGCCTTAAGGGGGAATAA

Upstream 100 bases:

>100_bases
CAATAAACTGCGGCTATTTAGACTGCAAAATAACCGTTGTTTACATTTTTTAGAGCACAAGCCATTCGCTGCGCTCCTTG
CCAAATTTTATCGAGGCTCA

Downstream 100 bases:

>100_bases
TCCTAAGCCATCAGTAGGTGGCTCCTTGTTCATAGCAAATCATGAATAGAGGCAAATTAACAAGCCGAACCATAAGTGTT
CGGCTTGATCATTGTAAGCT

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 342; Mature: 341

Protein sequence:

>342_residues
MSINVEQAIIHSISQDGEGQLSCRLRPQPLLNSQAVEAMLEELHQTYTTKAGKGFGHFGISGEDGEANTKFEDALTTYRS
GELGFVEFSGIAGKLLQEELSKYDFSTGGFLLLSCYTYMTSDYLFVSLLNAKSSMTVLDDMELSQNTHLDLNNVQLAARI
DLTEWQADPDSKKYISFVRGRAGRKVADFFLDFMGCVEGVNIKAQNKSLMNAVEDFVGNSELTKDERQQARERVFDYCTE
RCDEGASIQIKDLADELADQGVDSFYDFAQGGDYELEEEFPGDKPTLRQLKKFSGTGGGVTLSFDGQHLGERVIYDPVSD
TIIIKGVPANLKDQLDRRLKGE

Sequences:

>Translated_342_residues
MSINVEQAIIHSISQDGEGQLSCRLRPQPLLNSQAVEAMLEELHQTYTTKAGKGFGHFGISGEDGEANTKFEDALTTYRS
GELGFVEFSGIAGKLLQEELSKYDFSTGGFLLLSCYTYMTSDYLFVSLLNAKSSMTVLDDMELSQNTHLDLNNVQLAARI
DLTEWQADPDSKKYISFVRGRAGRKVADFFLDFMGCVEGVNIKAQNKSLMNAVEDFVGNSELTKDERQQARERVFDYCTE
RCDEGASIQIKDLADELADQGVDSFYDFAQGGDYELEEEFPGDKPTLRQLKKFSGTGGGVTLSFDGQHLGERVIYDPVSD
TIIIKGVPANLKDQLDRRLKGE
>Mature_341_residues
SINVEQAIIHSISQDGEGQLSCRLRPQPLLNSQAVEAMLEELHQTYTTKAGKGFGHFGISGEDGEANTKFEDALTTYRSG
ELGFVEFSGIAGKLLQEELSKYDFSTGGFLLLSCYTYMTSDYLFVSLLNAKSSMTVLDDMELSQNTHLDLNNVQLAARID
LTEWQADPDSKKYISFVRGRAGRKVADFFLDFMGCVEGVNIKAQNKSLMNAVEDFVGNSELTKDERQQARERVFDYCTER
CDEGASIQIKDLADELADQGVDSFYDFAQGGDYELEEEFPGDKPTLRQLKKFSGTGGGVTLSFDGQHLGERVIYDPVSDT
IIIKGVPANLKDQLDRRLKGE

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family [H]

Homologues:

Organism=Escherichia coli, GI1788513, Length=341, Percent_Identity=44.2815249266862, Blast_Score=309, Evalue=2e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007358 [H]

Pfam domain/function: PF04245 NA37 [H]

EC number: NA

Molecular weight: Translated: 38001; Mature: 37870

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: PS00935 GLYOXALASE_I_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSINVEQAIIHSISQDGEGQLSCRLRPQPLLNSQAVEAMLEELHQTYTTKAGKGFGHFGI
CCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SGEDGEANTKFEDALTTYRSGELGFVEFSGIAGKLLQEELSKYDFSTGGFLLLSCYTYMT
CCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
SDYLFVSLLNAKSSMTVLDDMELSQNTHLDLNNVQLAARIDLTEWQADPDSKKYISFVRG
HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHC
RAGRKVADFFLDFMGCVEGVNIKAQNKSLMNAVEDFVGNSELTKDERQQARERVFDYCTE
CCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RCDEGASIQIKDLADELADQGVDSFYDFAQGGDYELEEEFPGDKPTLRQLKKFSGTGGGV
HHCCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCE
TLSFDGQHLGERVIYDPVSDTIIIKGVPANLKDQLDRRLKGE
EEEECCHHHCCEEEECCCCCEEEEECCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
SINVEQAIIHSISQDGEGQLSCRLRPQPLLNSQAVEAMLEELHQTYTTKAGKGFGHFGI
CCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
SGEDGEANTKFEDALTTYRSGELGFVEFSGIAGKLLQEELSKYDFSTGGFLLLSCYTYMT
CCCCCCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
SDYLFVSLLNAKSSMTVLDDMELSQNTHLDLNNVQLAARIDLTEWQADPDSKKYISFVRG
HHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEHHHCCCCCCHHHHHHHHHC
RAGRKVADFFLDFMGCVEGVNIKAQNKSLMNAVEDFVGNSELTKDERQQARERVFDYCTE
CCCCHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
RCDEGASIQIKDLADELADQGVDSFYDFAQGGDYELEEEFPGDKPTLRQLKKFSGTGGGV
HHCCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCCCCCHHHHHHHHHCCCCCCE
TLSFDGQHLGERVIYDPVSDTIIIKGVPANLKDQLDRRLKGE
EEEECCHHHCCEEEECCCCCEEEEECCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA