| Definition | Shewanella halifaxensis HAW-EB4 chromosome, complete genome. |
|---|---|
| Accession | NC_010334 |
| Length | 5,226,917 |
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The map label for this gene is 167624391
Identifier: 167624391
GI number: 167624391
Start: 2971516
End: 2971917
Strand: Reverse
Name: 167624391
Synonym: Shal_2468
Alternate gene names: NA
Gene position: 2971917-2971516 (Counterclockwise)
Preceding gene: 167624392
Following gene: 167624390
Centisome position: 56.86
GC content: 41.79
Gene sequence:
>402_bases ATGATCAGCTCACGTTTGATTAATTTGAAAAGAGAGTTGATTATGAAATTGATACCGATATCGAGTGTGCTGCTGACTTC TGCATTGACTATTTTATCCTTGGGTGTTTTTTCGGTCGATGCCGCGACAGTGGGCTGTGAGCGTGCTGGTGGGATAAAAT GCCAGAAAGTTAAAAAGCCATATAGCCGCACTAAAGTGATTGTTGTGCCAAAAAACCACCGTCATTATCATGCATACCGC TCTCCATTATTAACAGCTCTTGGTGTAGCCATTGTGTTGGATGCTGCTGGTAACGCTGTAACAGATACAGGTAATGAAGT GGTTGTGTTAGGCGAAGGTAACGAAGTCAAAAATGTTTATGAGAAAGATGGCGTTGTCTATCTGATCAAAGAGCTAGGTT AA
Upstream 100 bases:
>100_bases ATTCTTTTTTGTCGGTAAGTATAGCGGTTTTTAATTGGGGCAAGTTCATAACTAGGCGGCTAGATATCTATATTGCTATG CACGTGTATACCTTTGCTTT
Downstream 100 bases:
>100_bases CATGTTTGATCATCTTGAGTTTAAGGCTCAACTACCGTTAATTGATAAGGCGTTAACCTTTTTAGCGGTAGTAATGTGTG TTTCAGGTTTACTCTTTATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 133; Mature: 133
Protein sequence:
>133_residues MISSRLINLKRELIMKLIPISSVLLTSALTILSLGVFSVDAATVGCERAGGIKCQKVKKPYSRTKVIVVPKNHRHYHAYR SPLLTALGVAIVLDAAGNAVTDTGNEVVVLGEGNEVKNVYEKDGVVYLIKELG
Sequences:
>Translated_133_residues MISSRLINLKRELIMKLIPISSVLLTSALTILSLGVFSVDAATVGCERAGGIKCQKVKKPYSRTKVIVVPKNHRHYHAYR SPLLTALGVAIVLDAAGNAVTDTGNEVVVLGEGNEVKNVYEKDGVVYLIKELG >Mature_133_residues MISSRLINLKRELIMKLIPISSVLLTSALTILSLGVFSVDAATVGCERAGGIKCQKVKKPYSRTKVIVVPKNHRHYHAYR SPLLTALGVAIVLDAAGNAVTDTGNEVVVLGEGNEVKNVYEKDGVVYLIKELG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14330; Mature: 14330
Theoretical pI: Translated: 9.89; Mature: 9.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISSRLINLKRELIMKLIPISSVLLTSALTILSLGVFSVDAATVGCERAGGIKCQKVKKP CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEECHHHCCCCCCCCCCHHHHCCC YSRTKVIVVPKNHRHYHAYRSPLLTALGVAIVLDAAGNAVTDTGNEVVVLGEGNEVKNVY CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCEEECCCCEEEEEECCCCHHHHH EKDGVVYLIKELG HCCCEEEEEEECC >Mature Secondary Structure MISSRLINLKRELIMKLIPISSVLLTSALTILSLGVFSVDAATVGCERAGGIKCQKVKKP CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHEECHHHCCCCCCCCCCHHHHCCC YSRTKVIVVPKNHRHYHAYRSPLLTALGVAIVLDAAGNAVTDTGNEVVVLGEGNEVKNVY CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEECCCCEEECCCCEEEEEECCCCHHHHH EKDGVVYLIKELG HCCCEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA