Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 167624388

GI number: 167624388

Start: 2969888

End: 2970244

Strand: Reverse

Name: ycfF [C]

Synonym: Shal_2465

Alternate gene names: 167624388

Gene position: 2970244-2969888 (Counterclockwise)

Preceding gene: 167624390

Following gene: 167624387

Centisome position: 56.83

GC content: 44.82

Gene sequence:

>357_bases
ATGGCCGAAGAAACCATATTTAGTAAAATTATTCGACGTGAAATTCCTGCGGACATCTTATATCAAGACGATCTTGTGAC
GGCATTTAGAGATATTACGCCTAAAGCGCCGACGCATGTGTTAATTATTCCCAATCATTTGATCCCTACAACAAACGACA
TTAAAGCATCCGACGAAAAAGCCTTGGGTCGTATGATGTCGGTGGCCGCTAAACTCGCTCAAGAAGCCGGTATTGCAGAA
GATGGCTATCGCTTAATCATGAACTGTAACCATCATGGTGGCCAAGAGGTTTTCCATGTTCACATGCATTTATTGGGCGG
TCACCCACTAGGCCCGATGTTGAGCCCTAGTGCATGA

Upstream 100 bases:

>100_bases
ACCCCCAGCCAATTGCGTGATTTACTTCATTAATCGTCCATCGCCTTGTGCATATTTTCGAGTATACTATGGCTAGTAAT
TTCCTTTTGAGGGCAGACAA

Downstream 100 bases:

>100_bases
GTGTAAGCAGTGATAGCTACCCGCTAACAGGTATGGCGAGCCGATTTGTTGAGCAGTTGACACAATGCCGTAAGCTTAAA
TTAAAGGTGCTAGAAGGTAG

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 117

Protein sequence:

>118_residues
MAEETIFSKIIRREIPADILYQDDLVTAFRDITPKAPTHVLIIPNHLIPTTNDIKASDEKALGRMMSVAAKLAQEAGIAE
DGYRLIMNCNHHGGQEVFHVHMHLLGGHPLGPMLSPSA

Sequences:

>Translated_118_residues
MAEETIFSKIIRREIPADILYQDDLVTAFRDITPKAPTHVLIIPNHLIPTTNDIKASDEKALGRMMSVAAKLAQEAGIAE
DGYRLIMNCNHHGGQEVFHVHMHLLGGHPLGPMLSPSA
>Mature_117_residues
AEETIFSKIIRREIPADILYQDDLVTAFRDITPKAPTHVLIIPNHLIPTTNDIKASDEKALGRMMSVAAKLAQEAGIAED
GYRLIMNCNHHGGQEVFHVHMHLLGGHPLGPMLSPSA

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=107, Percent_Identity=47.6635514018692, Blast_Score=107, Evalue=3e-24,
Organism=Homo sapiens, GI14211923, Length=109, Percent_Identity=44.0366972477064, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI1787346, Length=115, Percent_Identity=79.1304347826087, Blast_Score=179, Evalue=5e-47,
Organism=Caenorhabditis elegans, GI17506713, Length=109, Percent_Identity=44.954128440367, Blast_Score=108, Evalue=5e-25,
Organism=Drosophila melanogaster, GI28574010, Length=109, Percent_Identity=44.954128440367, Blast_Score=107, Evalue=1e-24,
Organism=Drosophila melanogaster, GI24581222, Length=106, Percent_Identity=46.2264150943396, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12972; Mature: 12841

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEETIFSKIIRREIPADILYQDDLVTAFRDITPKAPTHVLIIPNHLIPTTNDIKASDEK
CCHHHHHHHHHHHHCCHHHEECHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHH
ALGRMMSVAAKLAQEAGIAEDGYRLIMNCNHHGGQEVFHVHMHLLGGHPLGPMLSPSA
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
AEETIFSKIIRREIPADILYQDDLVTAFRDITPKAPTHVLIIPNHLIPTTNDIKASDEK
CHHHHHHHHHHHHCCHHHEECHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCHHH
ALGRMMSVAAKLAQEAGIAEDGYRLIMNCNHHGGQEVFHVHMHLLGGHPLGPMLSPSA
HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]