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The map label for this gene is ycfD [H]

Identifier: 167624225

GI number: 167624225

Start: 2786103

End: 2787248

Strand: Reverse

Name: ycfD [H]

Synonym: Shal_2301

Alternate gene names: 167624225

Gene position: 2787248-2786103 (Counterclockwise)

Preceding gene: 167624227

Following gene: 167624223

Centisome position: 53.32

GC content: 45.81

Gene sequence:

>1146_bases
ATGCAATTAGATATAAATGGCTTAACCCCCGAACAGTTTCTTAAAGAATACTGGCAAAAGAAACCATTAGTGATCCGCCA
AGGATTTAAAAACTTTCAAGATCTGTTGTCTCCAGATGAGATGGCAGGACTAGCTTGTGATGAAATGGTTGAATCTCGCA
GAGTCTATAGAGAGAAAGGGGAGTGGCAAGCTGAATTTGGCCCATTTGAATCTTATGAGAATCTTGGTGAAACAGATTGG
ACCTTGATTGTTCAGGCGCTTAATAACTGGGTGCCAGCGGCAGAAGATTTACTAAAATGTTTCGATTTTATTCCTCGCTG
GCGTTTAGATGATGTCATGGTTAGTTACGCTGTGCCTGGTGGTGGGGTTGGCCCGCATATCGATCTATACGATGTGTTTA
TCTGTCAAGGCTCAGGTCGACGTAGATGGCGTGTCGGGGATATTGGGCCTCATAAAGAGTTTGCAGCGCACCCAGCCTTG
CTACACACCGAAGCGTTCGAGCCTATCATCGATGTCGAATTGCTGCCTGGTGATATTCTGTATTTGCCACCTGGATTTCC
TCACGATGGCGTAACGTTAGAGCCTTCAATGAGCTTTTCTGTTGGTTACCGTACGGCTTCTGCAAAAGATATGGTGAGTG
CACTTGCTGACCACCTCATTGATAAAGAGATGGGTGCTCAGCAAATAAGCGATCCAGAACGTAGCTTAAGCCAGCACTCT
GGCTTGATCGATGAGCAAGACCTAGGCCGAATTAAGCAGCAGCTTGTTGACACCTTGGACGACACGCTAATTAGTGAGTT
CAGTGGTCGTTATCTAACACAATCTAAGTGCGAACTGGATCTGCCTGAGGCTAACTTAGGTTTCGACGTTGAAGATATCA
AGACTATCATTGCCGAGCAGCCTTTGATCCGTTTAGGTGGCTTACGTTGCCTCTATTTCGCTGCAACCTTAGGCTCAGGT
GTTATGTACATCAATGGTGAGCAAGTTCAGTTTGCTGAAGGCCGCTCAGAGGTTATCGAAGCGCTCTGTAACAAACAGAT
GCTTACCCTTGAAGACATCCAAACATGGTTTGATGATGACGCCGTTATGGTGCAACTAACAGAGTGGGTTAATGCCGGCT
ACTGGTATTTTGACGATTTAGACTGA

Upstream 100 bases:

>100_bases
GTCCTATAGCTGTACAAATTAAGCATGTTTCATGATCTAACTGAGTTTATTTTTTGCGTTTTTTTGCTAGAATGCGTGCA
AATTTTAGTGAGTATGCAAC

Downstream 100 bases:

>100_bases
GCGTAACAGTATTATCCATAACTAGCGCGAATAGATATAAATAGGAGCCCAATTGCAGTTAAGCGATTGGGCTTTTTATT
ATCTAACGATAGTTTAGAGA

Product: cupin 4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKGEWQAEFGPFESYENLGETDW
TLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPGGGVGPHIDLYDVFICQGSGRRRWRVGDIGPHKEFAAHPAL
LHTEAFEPIIDVELLPGDILYLPPGFPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDKEMGAQQISDPERSLSQHS
GLIDEQDLGRIKQQLVDTLDDTLISEFSGRYLTQSKCELDLPEANLGFDVEDIKTIIAEQPLIRLGGLRCLYFAATLGSG
VMYINGEQVQFAEGRSEVIEALCNKQMLTLEDIQTWFDDDAVMVQLTEWVNAGYWYFDDLD

Sequences:

>Translated_381_residues
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKGEWQAEFGPFESYENLGETDW
TLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPGGGVGPHIDLYDVFICQGSGRRRWRVGDIGPHKEFAAHPAL
LHTEAFEPIIDVELLPGDILYLPPGFPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDKEMGAQQISDPERSLSQHS
GLIDEQDLGRIKQQLVDTLDDTLISEFSGRYLTQSKCELDLPEANLGFDVEDIKTIIAEQPLIRLGGLRCLYFAATLGSG
VMYINGEQVQFAEGRSEVIEALCNKQMLTLEDIQTWFDDDAVMVQLTEWVNAGYWYFDDLD
>Mature_381_residues
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKGEWQAEFGPFESYENLGETDW
TLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPGGGVGPHIDLYDVFICQGSGRRRWRVGDIGPHKEFAAHPAL
LHTEAFEPIIDVELLPGDILYLPPGFPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDKEMGAQQISDPERSLSQHS
GLIDEQDLGRIKQQLVDTLDDTLISEFSGRYLTQSKCELDLPEANLGFDVEDIKTIIAEQPLIRLGGLRCLYFAATLGSG
VMYINGEQVQFAEGRSEVIEALCNKQMLTLEDIQTWFDDDAVMVQLTEWVNAGYWYFDDLD

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=368, Percent_Identity=41.8478260869565, Blast_Score=320, Evalue=1e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 43115; Mature: 43115

Theoretical pI: Translated: 4.12; Mature: 4.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKG
CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHCC
EWQAEFGPFESYENLGETDWTLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPG
CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHEEECCC
GGVGPHIDLYDVFICQGSGRRRWRVGDIGPHKEFAAHPALLHTEAFEPIIDVELLPGDIL
CCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHCCCHHHHHHHCCCEEEEEECCCCEE
YLPPGFPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDKEMGAQQISDPERSLSQHS
EECCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHC
GLIDEQDLGRIKQQLVDTLDDTLISEFSGRYLTQSKCELDLPEANLGFDVEDIKTIIAEQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHCC
PLIRLGGLRCLYFAATLGSGVMYINGEQVQFAEGRSEVIEALCNKQMLTLEDIQTWFDDD
CHHHHCCHHHHHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHCCCCEEHHHHHHHHCCC
AVMVQLTEWVNAGYWYFDDLD
HHEEEEHHHHCCCCEEECCCC
>Mature Secondary Structure
MQLDINGLTPEQFLKEYWQKKPLVIRQGFKNFQDLLSPDEMAGLACDEMVESRRVYREKG
CEEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHHHCC
EWQAEFGPFESYENLGETDWTLIVQALNNWVPAAEDLLKCFDFIPRWRLDDVMVSYAVPG
CCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHEEECCC
GGVGPHIDLYDVFICQGSGRRRWRVGDIGPHKEFAAHPALLHTEAFEPIIDVELLPGDIL
CCCCCCCEEEEEEEEECCCCCEEECCCCCCCHHHHCCCHHHHHHHCCCEEEEEECCCCEE
YLPPGFPHDGVTLEPSMSFSVGYRTASAKDMVSALADHLIDKEMGAQQISDPERSLSQHS
EECCCCCCCCEEECCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHC
GLIDEQDLGRIKQQLVDTLDDTLISEFSGRYLTQSKCELDLPEANLGFDVEDIKTIIAEQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHCC
PLIRLGGLRCLYFAATLGSGVMYINGEQVQFAEGRSEVIEALCNKQMLTLEDIQTWFDDD
CHHHHCCHHHHHHHHHHCCCEEEECCCEEEECCCHHHHHHHHHCCCCEEHHHHHHHHCCC
AVMVQLTEWVNAGYWYFDDLD
HHEEEEHHHHCCCCEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]